Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	TC86408	no hits with E-value < 1e-10	2.5	15.541	1 - 21	1365 - 1385	Cleavage	AGAAGATAAAACACGCCAGTG ::::.:::::::::.: :::: TCTTTTATTTTGTGTGATCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	TC87099	no hits with E-value < 1e-10	3	16.316	1 - 21	1634 - 1654	Cleavage	AGAAGATAAAACACGCCAGTG :: ::.:::::::.:::::: CCTCCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000275026	no hits with E-value < 1e-10	1	9.607	1 - 21	1696 - 1716	Cleavage	AGAAGATAAAACACGCCAGTG ::: ::::::::::::::::: TCTCCTATTTTGTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000209144	no hits with E-value < 1e-10	1	24.534	1 - 20	27 - 46	Cleavage	GAAGATAAAACACGCCAGTG :::::.:::::::.:::::: CTTCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000136300	no hits with E-value < 1e-10	1	20.77	1 - 20	150 - 169	Cleavage	GAAGATAAAACACGCCAGTG :::::.:::::::.:::::: CTTCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000195837	no hits with E-value < 1e-10	2	8.517	1 - 21	27 - 47	Cleavage	AGAAGATAAAACACGCCAGTG ::::::.::::::: :::::: TCTTCTGTTTTGTGAGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000262863	no hits with E-value < 1e-10	1.5	15.531	1 - 20	797 - 816	Cleavage	GAAGATAAAACACGCCAGTG ::.:::::::::::::::: ATTTTATTTTGTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000643281	no hits with E-value < 1e-10	2	14.173	1 - 21	54 - 74	Cleavage	AGAAGATAAAACACGCCAGTG ::: .:::::: ::::::::: TCTCTTATTTTNTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000526036	no hits with E-value < 1e-10	2	18.216	1 - 21	2270 - 2290	Cleavage	AGAAGATAAAACACGCCAGTG :.: .:::::::::::::::: TTTCTTATTTTGTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000201509	no hits with E-value < 1e-10	2	15.526	1 - 21	168 - 188	Cleavage	AGAAGATAAAACACGCCAGTG ::: ::.:::::::.:::::: TCTCCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000167997	no hits with E-value < 1e-10	2.5	22.748	1 - 21	1685 - 1705	Cleavage	AGAAGATAAAACACGCCAGTG ::::::.:::::::.:::: : TCTTCTGTTTTGTGTGGTCTC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000642684	no hits with E-value < 1e-10	2	7.402	1 - 20	77 - 96	Cleavage	GAAGATAAAACACGCCAGTG :::.:.:::::::.::: :: CTTTTGTTTTGTGTGGTNAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000255187	no hits with E-value < 1e-10	1.5	13.445	1 - 20	18 - 37	Cleavage	GAAGATAAAACACGCCAGTG :: .:::::::::::::::: CTCTTATTTTGTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000481610	no hits with E-value < 1e-10	2	15.81	1 - 20	856 - 875	Cleavage	GAAGATAAAACACGCCAGTG .::.:.:::::::.:::::: TTTTTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000812684	no hits with E-value < 1e-10	1.5	13.478	1 - 20	27 - 46	Cleavage	GAAGATAAAACACGCCAGTG :: .:::::::::::::::: CTCTTATTTTGTGCGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000322487	no hits with E-value < 1e-10	2.5	20.854	1 - 21	3471 - 3491	Cleavage	AGAAGATAAAACACGCCAGTG ::: ::.:::::::.::::.: TCTCCTGTTTTGTGTGGTCGC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000879934	no hits with E-value < 1e-10	2.5	20.518	1 - 20	302 - 321	Cleavage	GAAGATAAAACACGCCAGTG . :::::::::::::::.:: TGTCTATTTTGTGCGGTTAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000599637	no hits with E-value < 1e-10	3	16.704	1 - 21	174 - 194	Cleavage	AGAAGATAAAACACGCCAGTG :.::.:::::::::.: :::: TTTTTTATTTTGTGTGATCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000317368	no hits with E-value < 1e-10	2	15.458	1 - 20	4250 - 4269	Cleavage	GAAGATAAAACACGCCAGTG :: ::.:::::::.:::::: CTCCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000312773	no hits with E-value < 1e-10	2	12.763	1 - 20	3935 - 3954	Cleavage	GAAGATAAAACACGCCAGTG :: ::.:::::::.:::::: CTCCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000315892	no hits with E-value < 1e-10	2	13.918	1 - 20	3650 - 3669	Cleavage	GAAGATAAAACACGCCAGTG :: ::.:::::::.:::::: CTCCTGTTTTGTGTGGTCAC
mdm-MIR219N	None	GTGACCGCACAAAATAGAAGA	NOVEL	MDP0000170865	no hits with E-value < 1e-10	2	14.69	1 - 20	2492 - 2511	Cleavage	GAAGATAAAACACGCCAGTG :: ::.:::::::.:::::: CTCCTGTTTTGTGTGGTCAC

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (22)

name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex