Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	TC65713	no hits with E-value < 1e-10	2	7.84	1 - 21	276 - 296	Cleavage	ATCATCTTCTACTTTCTTATG :: ::::::::::::::::: AAGGAGAAGATGAAAGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	TC60686	no hits with E-value < 1e-10	2	7.84	1 - 21	399 - 419	Cleavage	ATCATCTTCTACTTTCTTATG :: ::::::::::::::::: AAGGAGAAGATGAAAGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	TC82600	no hits with E-value < 1e-10	2	8.652	1 - 21	1657 - 1677	Cleavage	ATCATCTTCTACTTTCTTATG :: ::::::::::::::::: AAGGAGAAGATGAAAGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	CV656088	no hits with E-value < 1e-10	3	15.108	1 - 21	473 - 493	Cleavage	ATCATCTTCTACTTTCTTATG ::::::.:::::::::: :: GAGTAGAGGATGAAAGAAGAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000141863	no hits with E-value < 1e-10	2	8.027	1 - 21	1876 - 1896	Cleavage	ATCATCTTCTACTTTCTTATG :: ::::::::::::::::: AAGGAGAAGATGAAAGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000205111	no hits with E-value < 1e-10	2	4.165	1 - 21	1876 - 1896	Cleavage	ATCATCTTCTACTTTCTTATG :: ::::::::::::::::: AAGGAGAAGATGAAAGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000133655	no hits with E-value < 1e-10	2.5	18.084	1 - 21	374 - 394	Cleavage	ATCATCTTCTACTTTCTTATG ::::: :::.:::::::::: TAGTAAAAGGTGAAAGAATAG
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000247869	no hits with E-value < 1e-10	2.5	15.157	1 - 21	5006 - 5026	Cleavage	ATCATCTTCTACTTTCTTATG ::::: ::::::::::.::: AAGTAGCAGATGAAAGAGTAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000439151	no hits with E-value < 1e-10	3	22.134	1 - 21	1401 - 1421	Cleavage	ATCATCTTCTACTTTCTTATG : ::.::::::::::::::. TCGTGGAAGATGAAAGAATGA
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000226447	no hits with E-value < 1e-10	3	7.967	1 - 21	1651 - 1671	Cleavage	ATCATCTTCTACTTTCTTATG .: :::::::::::::.::: AGGGAGAAGATGAAAGAGTAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000156392	no hits with E-value < 1e-10	3	17.937	1 - 21	1406 - 1426	Cleavage	ATCATCTTCTACTTTCTTATG : ::::::::::::: .:::: TTGTAGAAGATGAAATGATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000512079	no hits with E-value < 1e-10	3	15.415	1 - 21	17 - 37	Translation	ATCATCTTCTACTTTCTTATG :: ::::::: ::::::::: TAATAGAAGAAGAAAGAATAG
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000144997	no hits with E-value < 1e-10	3	17.026	1 - 21	688 - 708	Translation	ATCATCTTCTACTTTCTTATG :.: :::::: :::.:::::: TGGCAGAAGAGGAAGGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000808941	no hits with E-value < 1e-10	3	17.026	1 - 21	688 - 708	Translation	ATCATCTTCTACTTTCTTATG :.: :::::: :::.:::::: TGGCAGAAGAGGAAGGAATAC
mdm-MIR200N	None	GTATTCTTTCATCTTCTACTA	NOVEL	MDP0000138090	no hits with E-value < 1e-10	3	22.746	1 - 21	4715 - 4735	Translation	ATCATCTTCTACTTTCTTATG :::::: ::::: :.::.::: TAGTAGTAGATGCAGGAGTAC

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KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (15)