Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	CV794226	no hits with E-value < 1e-10	0	8.883	1 - 21	267 - 287	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	TC94613	no hits with E-value < 1e-10	0	9.711	1 - 21	71 - 91	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	CX025364	no hits with E-value < 1e-10	0.5	11.989	1 - 21	145 - 165	Cleavage	TGCTAAAGTGTCAGTTAATGG :.::::::::::::::::::: ATGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	CN929504	no hits with E-value < 1e-10	3	7.764	1 - 21	135 - 155	Translation	TGCTAAAGTGTCAGTTAATGG : :::::::: ::::::::: CCAATTTCACAATCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000148495	no hits with E-value < 1e-10	0	18.859	1 - 21	531 - 551	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000249258	no hits with E-value < 1e-10	0	8.883	1 - 21	470 - 490	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000281358	no hits with E-value < 1e-10	0	8.468	1 - 21	188 - 208	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000281356	no hits with E-value < 1e-10	0	9.62	1 - 21	422 - 442	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000703834	Putative AC9 transposase E-value: 5e-15 more	0	9.203	1 - 21	929 - 949	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000281359	no hits with E-value < 1e-10	0	10.549	1 - 21	1136 - 1156	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000311297	no hits with E-value < 1e-10	0	9.079	1 - 21	605 - 625	Cleavage	TGCTAAAGTGTCAGTTAATGG ::::::::::::::::::::: ACGATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000148494	no hits with E-value < 1e-10	1	9.083	1 - 21	173 - 193	Translation	TGCTAAAGTGTCAGTTAATGG :::::::::: :::::::::: ACGATTTCACTGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000237505	no hits with E-value < 1e-10	1	5.45	1 - 21	473 - 493	Cleavage	TGCTAAAGTGTCAGTTAATGG :: :::::::::::::::::: ACCATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000302933	no hits with E-value < 1e-10	1	5.713	1 - 21	1496 - 1516	Cleavage	TGCTAAAGTGTCAGTTAATGG :: :::::::::::::::::: ACCATTTCACAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000210668	no hits with E-value < 1e-10	2	8.739	1 - 21	374 - 394	Cleavage	TGCTAAAGTGTCAGTTAATGG : ::::::: ::::::::::: AGGATTTCAAAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000211757	no hits with E-value < 1e-10	2	10.04	1 - 21	173 - 193	Cleavage	TGCTAAAGTGTCAGTTAATGG : ::::::: ::::::::::: AGGATTTCAAAGTCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000521251	no hits with E-value < 1e-10	3	8.069	1 - 21	152 - 172	Cleavage	TGCTAAAGTGTCAGTTAATGG :.:. ::::::::::.:::.: ATGGCTTCACAGTCAGTTATC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000561750	no hits with E-value < 1e-10	2.5	8.24	1 - 21	549 - 569	Translation	TGCTAAAGTGTCAGTTAATGG :: ::::::: :::.:::::: ACAATTTCACCGTCGATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000421767	no hits with E-value < 1e-10	3	6.117	1 - 21	128 - 148	Translation	TGCTAAAGTGTCAGTTAATGG : :::::::: ::::::::: CCAATTTCACAATCAATTACC
mdm-MIR155N	None	GGTAATTGACTGTGAAATCGT	NOVEL	MDP0000174619	no hits with E-value < 1e-10	3	12.05	1 - 21	1217 - 1237	Translation	TGCTAAAGTGTCAGTTAATGG :: ::::::::: :.:::::. ACTATTTCACAGCCGATTACT

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (20)

name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex