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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR139N None CTTGGGATTCAGTCTAGGACTT NOVEL MDP0000253588no hits with E-value < 1e-10 1.5 17.185 1 - 22 1050 - 1071 Cleavage 
TTCAGGATCTGACTTAGGGTTC
 ::::::::: :::::::::::
CAGTCCTAGANTGAATCCCAAG
mdm-MIR139N None CTTGGGATTCAGTCTAGGACTT NOVEL MDP0000295766Topless-related protein 1
E-value: 0.0
more		 3 8.016 1 - 22 864 - 885 Cleavage 
TTCAGGATCTGACTTAGGGTTC
:: :::::::::::::::..:
AAATCCTAGACTGAATCCTGAT
mdm-MIR139N None CTTGGGATTCAGTCTAGGACTT NOVEL MDP0000246186no hits with E-value < 1e-10 3 21.533 1 - 22 35 - 56 Cleavage 
TTCAGGATCTGACTTAGGGTTC
::::: ::::.::.::.:::.:
AAGTCATAGATTGGATTCCAGG
mdm-MIR139N None CTTGGGATTCAGTCTAGGACTT NOVEL MDP0000392251High mobility group B protein 14
E-value: 5e-18
more		 3 14.99 1 - 22 406 - 427 Translation 
TTCAGGATCTGACTTAGGGTTC
:::: ::::::: .::.:::::
AAGTGCTAGACTTGATTCCAAG
mdm-MIR139N None CTTGGGATTCAGTCTAGGACTT NOVEL MDP0000552855no hits with E-value < 1e-10 3 20.447 1 - 22 582 - 603 Cleavage 
TTCAGGATCTGACTTAGGGTTC
:::::: ::.:::: :.:::::
AAGTCCGAGGCTGATTTCCAAG

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (5)