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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN CN924436no hits with E-value < 1e-10 2.5 11.449 1 - 21 202 - 222 Cleavage 
GGTACGAGATGGAGAAGGGAC
:.:::::::::::.::::.:
CTATGCTCTACCTTTTCCTTT
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN EB148919no hits with E-value < 1e-10 3 3.385 1 - 21 10 - 30 Cleavage 
GGTACGAGATGGAGAAGGGAC
:.::::::::..:::::.::
CTATGCTCTATTTCTTCTCTC
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN TC69171no hits with E-value < 1e-10 3 14.459 1 - 21 364 - 384 Cleavage 
GGTACGAGATGGAGAAGGGAC
 ::::::: :::::::..:::
GCATGCTCAACCTCTTTTCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN CN880297no hits with E-value < 1e-10 2.5 14.983 1 - 21 234 - 254 Cleavage 
GGTACGAGATGGAGAAGGGAC
::  ::::::::::::.::::
CCCAGCTCTACCTCTTTCCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN TC68646no hits with E-value < 1e-10 3 7.317 1 - 21 393 - 413 Cleavage 
GGTACGAGATGGAGAAGGGAC
.: :::::: :::.:::::::
TCTTGCTCTTCCTTTTCCCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000896307no hits with E-value < 1e-10 3 5.982 1 - 21 181 - 201 Cleavage 
GGTACGAGATGGAGAAGGGAC
:.::::::::..:::::.::
CTATGCTCTATTTCTTCTCTC
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000141160Trihelix transcription factor GT-1
E-value: 7e-33
more		 2.5 17.187 1 - 21 721 - 741 Cleavage 
GGTACGAGATGGAGAAGGGAC
::.:::::: :.::::::.::
CCGTGCTCTCCTTCTTCCTTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000732145Protein GIGANTEA
E-value: 4e-17
more		 2.5 15.278 1 - 21 837 - 857 Cleavage 
GGTACGAGATGGAGAAGGGAC
::.:::::: :.::::::.::
CCGTGCTCTCCTTCTTCCTTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000715244Transmembrane protein 131
E-value: 5e-12
more		 3 13.77 1 - 21 3988 - 4008 Cleavage 
GGTACGAGATGGAGAAGGGAC
 ::::::: :::::::..:::
GCATGCTCAACCTCTTTTCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000299027Dolichyl-diphosphooligosaccharide--protein glycosyltransferase s
E-value: 0.0
more		 3 7.324 1 - 21 1505 - 1525 Cleavage 
GGTACGAGATGGAGAAGGGAC
.: :::::: :::.:::::::
TCTTGCTCTTCCTTTTCCCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000589608Dolichyl-diphosphooligosaccharide--protein glycosyltransferase s
E-value: 0.0
more		 3 7.834 1 - 21 1493 - 1513 Cleavage 
GGTACGAGATGGAGAAGGGAC
.: :::::: :::.:::::::
TCTTGCTCTTCCTTTTCCCTG
mdm-MIR408a osa-miR408-5p CAGGGAAGAGGTAGAGCATGG KNOWN MDP0000643975no hits with E-value < 1e-10 3 7.888 1 - 21 140 - 160 Cleavage 
GGTACGAGATGGAGAAGGGAC
.::: :::: .::::::::::
TCATTCTCTCTCTCTTCCCTG

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KNOWN: 1 (12)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 0 (0)