Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	TC87534	no hits with E-value < 1e-10	1.5	23.62	1 - 21	593 - 613	Cleavage	TGTCCTACCATGTGGTGTACA ::.:::::::::::::..::: ACGGGATGGTACACCATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN923490	no hits with E-value < 1e-10	2	17.47	1 - 21	523 - 543	Cleavage	TGTCCTACCATGTGGTGTACA ::.::::::::.:.:::.::: ACGGGATGGTATATCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	TC67044	no hits with E-value < 1e-10	2	20.252	1 - 21	632 - 652	Cleavage	TGTCCTACCATGTGGTGTACA ::.: ::::::::::::.::: ACGGAATGGTACACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN490661	no hits with E-value < 1e-10	2.5	20.039	1 - 21	391 - 411	Cleavage	TGTCCTACCATGTGGTGTACA ::. :::::::::.:::.::: ACGAGATGGTACATCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	TC65502	no hits with E-value < 1e-10	2.5	22.419	1 - 21	630 - 650	Cleavage	TGTCCTACCATGTGGTGTACA : :::.::::::::::..::: AGAGGGTGGTACACCATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN921815	no hits with E-value < 1e-10	3	18.285	1 - 21	86 - 106	Cleavage	TGTCCTACCATGTGGTGTACA :..::::: ::::.:::.::: ATGGGATGATACATCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	EB108193	no hits with E-value < 1e-10	3	18.778	1 - 21	276 - 296	Cleavage	TGTCCTACCATGTGGTGTACA ::. ::::::::::.:..::: ACGAGATGGTACACTATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN899652	no hits with E-value < 1e-10	3	21.443	1 - 21	374 - 394	Cleavage	TGTCCTACCATGTGGTGTACA :..:::: ::::::::..::: ATGGGATAGTACACCATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN993245	no hits with E-value < 1e-10	3	13.384	1 - 21	58 - 78	Cleavage	TGTCCTACCATGTGGTGTACA :::::::: ::.:...::::: ACAGGATGATATATTGCATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	CN872636	no hits with E-value < 1e-10	3	16.993	1 - 21	344 - 364	Cleavage	TGTCCTACCATGTGGTGTACA :..: ::::::::..:::::: ATGGAATGGTACATTACATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	TC93159	no hits with E-value < 1e-10	3	19.835	1 - 21	504 - 524	Cleavage	TGTCCTACCATGTGGTGTACA ::. :.::::::::::..::: ACGAGGTGGTACACCATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000392106	no hits with E-value < 1e-10	1	24.532	1 - 21	1781 - 1801	Cleavage	TGTCCTACCATGTGGTGTACA ::.::::::::.::::::::: ACGGGATGGTATACCACATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000349581	no hits with E-value < 1e-10	1.5	23.595	1 - 21	592 - 612	Cleavage	TGTCCTACCATGTGGTGTACA ::.:::::::::::::..::: ACGGGATGGTACACCATGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000166617	no hits with E-value < 1e-10	1.5	17.768	1 - 21	121 - 141	Cleavage	TGTCCTACCATGTGGTGTACA ::.:::::::.::::::.::: ACGGGATGGTGCACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000745371	no hits with E-value < 1e-10	1.5	24.505	1 - 21	1029 - 1049	Cleavage	TGTCCTACCATGTGGTGTACA ::: :.::::::::::::::: ACAAGGTGGTACACCACATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000209662	no hits with E-value < 1e-10	1.5	24.505	1 - 21	1265 - 1285	Cleavage	TGTCCTACCATGTGGTGTACA ::: :.::::::::::::::: ACAAGGTGGTACACCACATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000153031	no hits with E-value < 1e-10	2	18.231	1 - 21	113 - 133	Cleavage	TGTCCTACCATGTGGTGTACA :..::::::::::.:::.::: ATGGGATGGTACATCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000446238	no hits with E-value < 1e-10	2	14.069	1 - 21	51 - 71	Cleavage	TGTCCTACCATGTGGTGTACA ::: :.::::::::::.:::: ACAAGGTGGTACACCATATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000123488	no hits with E-value < 1e-10	2	20.256	1 - 21	844 - 864	Cleavage	TGTCCTACCATGTGGTGTACA ::. :::::::::::::.::: ACGAGATGGTACACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000317209	Anthocyanin regulatory C1 protein E-value: 5e-45 more	2	17.053	1 - 21	1035 - 1055	Cleavage	TGTCCTACCATGTGGTGTACA ::. ::::::::::::.:::: ACGAGATGGTACACCATATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000127652	no hits with E-value < 1e-10	2	20.256	1 - 21	1457 - 1477	Cleavage	TGTCCTACCATGTGGTGTACA ::. :::::::::::::.::: ACGAGATGGTACACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000376256	no hits with E-value < 1e-10	3	18.261	1 - 21	46 - 66	Cleavage	TGTCCTACCATGTGGTGTACA :::::::::::::::::: TACGGATGGTACACCACATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000258603	no hits with E-value < 1e-10	2	10.327	1 - 21	6350 - 6370	Cleavage	TGTCCTACCATGTGGTGTACA ::: ::::::::::.:.:::: ACAAGATGGTACACTATATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000841456	no hits with E-value < 1e-10	2.5	20.216	1 - 21	352 - 372	Cleavage	TGTCCTACCATGTGGTGTACA ::. :.:::::::::::.::: ACGAGGTGGTACACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000167021	no hits with E-value < 1e-10	2.5	21.101	1 - 21	697 - 717	Cleavage	TGTCCTACCATGTGGTGTACA ::. :::::::::.:::.::: ACGAGATGGTACATCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000180962	no hits with E-value < 1e-10	3	19.115	1 - 21	817 - 837	Cleavage	TGTCCTACCATGTGGTGTACA :::::::::::::..::.: : ACAGGATGGTACATTACGTAT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000205262	no hits with E-value < 1e-10	3	10.434	1 - 21	819 - 839	Cleavage	TGTCCTACCATGTGGTGTACA ::::: :: ::::..::.: : ACAGGNTGNTACATTACGTNT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000201517	no hits with E-value < 1e-10	2.5	10.832	1 - 21	15 - 35	Cleavage	TGTCCTACCATGTGGTGTACA ::.::::: ::::.::: ::: ACGGGATGTTACATCACNTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000913255	no hits with E-value < 1e-10	2.5	15.759	1 - 21	91 - 111	Cleavage	TGTCCTACCATGTGGTGTACA ::. ::::::::::.:.:::: ACGAGATGGTACACTATATGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000244081	UPF0136 membrane protein At2g26240 E-value: 8e-18 more	2.5	18.941	1 - 21	8 - 28	Cleavage	TGTCCTACCATGTGGTGTACA ::: :.:::::.:::::.::: ACAAGGTGGTATACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000247505	no hits with E-value < 1e-10	2.5	20.084	1 - 21	43 - 63	Cleavage	TGTCCTACCATGTGGTGTACA ::.: .:::::::::::.::: ACGGAGTGGTACACCACGTGT
mdm-MIR142N	None	ACATGTGGTGTACCATCCTGT	NOVEL	MDP0000908071	no hits with E-value < 1e-10	2.5	21.101	1 - 21	1399 - 1419	Cleavage	TGTCCTACCATGTGGTGTACA ::. :::::::::.:::.::: ACGAGATGGTACATCACGTGT

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (32)

name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex