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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED TC67948no hits with E-value < 1e-10 2 15.279 1 - 21 167 - 187 Translation 
CCGCGATAGGGAGGACTCGAA
::.:::::::. :::::::::
GGTGCTATCCTACCTGAGCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED TC80679no hits with E-value < 1e-10 3 20.099 1 - 21 293 - 313 Cleavage 
CCGCGATAGGGAGGACTCGAA
::.:.:.:.:.::.:::::::
GGTGTTGTTCTTCTTGAGCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED TC84557no hits with E-value < 1e-10 3 14.094 1 - 21 185 - 205 Cleavage 
CCGCGATAGGGAGGACTCGAA
:::: ::::.::::::: :::
GGCGATATCTCTCCTGACCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED TC74614no hits with E-value < 1e-10 3 17.976 1 - 21 185 - 205 Translation 
CCGCGATAGGGAGGACTCGAA
::.:::::::.  ::::::::
GGTGCTATCCTAGCTGAGCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED MDP0000353698no hits with E-value < 1e-10 1.5 14.909 1 - 21 194 - 214 Cleavage 
CCGCGATAGGGAGGACTCGAA
:::: ::::.:::::::::::
GGCGATATCTCTCCTGAGCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED MDP0000809801no hits with E-value < 1e-10 2 15.279 1 - 21 454 - 474 Translation 
CCGCGATAGGGAGGACTCGAA
::.:::::::. :::::::::
GGTGCTATCCTACCTGAGCTT
mdm-MIR390c ath-miR390a AAGCTCAGGAGGGATAGCGCC KNOWN and CONSERVED MDP0000950533Phytosulfokine receptor 2
E-value: 0.0
more		 3 20.099 1 - 21 3181 - 3201 Cleavage 
CCGCGATAGGGAGGACTCGAA
::.:.:.:.:.::.:::::::
GGTGTTGTTCTTCTTGAGCTT

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KNOWN: 0 (0)
KNOWN and CONSERVED: 1 (7)
CONSERVED: 0 (0)
NOVEL: 0 (0)