HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR164c TGGAGAAGCAGGGCACGTGCA 942 471 0 655 2.5 plot alignment MDP0000121265
 5'     TGGAGAAGCAGGGCACGTGCA        3'
        ||||||||||||||||||o
 3' CCCAACCTCTTCGTCCCGTGCATTACCCTGAG 5'
UniProt best hit: sp|Q9FLJ2|NC100_ARATH (E-value = 3e-141)
miRBase: no hits
TGGAGAAGCAGGGCACGTGCA
(0 mismatches)
mdm-MIR164c TGGAGAAGCAGGGCACGTGCA 942 471 0 655 2.5 plot alignment MDP0000911724
 5'     TGGAGAAGCAGGGCACGTGCA        3'
        ||||||||||||||||||o
 3' CCCAACCTCTTCGTCCCGTGCATTACCCTGAG 5'
UniProt best hit: sp|Q9FLJ2|NC100_ARATH (E-value = 1e-143)
miRBase: no hits
TGGAGAAGCAGGGCACGTGCA
(0 mismatches)

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