HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR156h TGACAGAAGAGAGTGAGCAC 9 4.5 0.01 403 2 plot alignment gnl|UG|Mdo#S21625786
 5'     TGACAGAAGAGAGTGAGCAC         3'
        ||||||||||||| |||||
 3' CCCAACTGTCTTCTCTCTCTCGTATAGTATAC 5'
UniProt best hit: sp|Q38740|SBP2_ANTMA (E-value = 1e-38)
miRBase: no hits
TGACAGAAGAGAGTGAGCACT
(0 mismatches)
mdm-MIR156h TGACAGAAGAGAGTGAGCAC 9 4.5 0.01 610 2 plot alignment gnl|UG|Mdo#S35708880
 5'     TGACAGAAGAGAGTGAGCAC         3'
        ||||||||||||| |||||
 3' CCCAACTGTCTTCTCTCTCTCGTATAGTATAC 5'
UniProt best hit: sp|Q38740|SBP2_ANTMA (E-value = 3e-37)
miRBase: no hits
TGACAGAAGAGAGTGAGCACT
(0 mismatches)

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