HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR167i TGAAGCTGCCAGCATGATCTTA 46 7.66667 0.03 2468 3.5 plot alignment gnl|UG|Mdo#S35708860
 5'     TGAAGCTGCCAGCATGATCTTA       3'
          ||||||||||| ||||||o|
 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
UniProt best hit: sp|Q9ZTX8|ARFF_ARATH (E-value = 0.0)
miRBase: no hits
TGAAGCTGCCAGCATGATCTTA
(0 mismatches)
mdm-MIR167i TGAAGCTGCCAGCATGATCTTA 46 7.66667 0.04 2429 3.5 plot alignment MDP0000232417
 5'     TGAAGCTGCCAGCATGATCTTA       3'
          ||||||||||| ||||||o|
 3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5'
UniProt best hit: sp|Q9ZTX8|ARFF_ARATH (E-value = 0.0)
miRBase: no hits
TGAAGCTGCCAGCATGATCTTA
(0 mismatches)

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