name |
sequence |
fragment abundance |
weighted fragment abundance |
p-value |
cleavage position |
alignment score |
plot |
alignment |
transcript name |
duplex |
BLAST search |
most similar mature |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 304 | 31.5152 | 0 | 658 | 2 | plot | alignment | MDP0000810351 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 2e-146) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 655 | 2.5 | plot | alignment | MDP0000415930 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 7e-140) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 18 | 4.5 | 0.03 | 537 | 3 | plot | alignment | MDP0000130212 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||o||||o||||| |||||||
3' GTCGAGGAAGGGTAGGGTAGGTAAGGAGGGTG 5' |
UniProt best hit: sp|Q9SAG8|DNAJ8_ARATH (E-value = 1e-33) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 214 | 2 | plot | alignment | MDP0000275398 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGTACAGA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 9e-103) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0.01 | 655 | 2.5 | plot | alignment | MDP0000464475 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-24) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 4 | 1.33333 | 0.02 | 421 | 3 | plot | alignment | MDP0000127345 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||| ||o|| ||||||||o||
3' CAACAGAACGGGTAAGGAGGGTAGGGATCTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 4e-71) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 50 | 7.14286 | 0.03 | 640 | 4 | plot | alignment | MDP0000193109 | 5' TCTTTCCTATCCCTCCCATTCC 3'
| || ||o|| ||||||||o||
3' CAACAAAACGGGTAAGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 8e-40) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 472 | 2.5 | plot | alignment | MDP0000233739 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-144) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 50 | 7.14286 | 0.03 | 187 | 4 | plot | alignment | MDP0000160289 | 5' TCTTTCCTATCCCTCCCATTCC 3'
| || ||o|| ||||||||o||
3' CAACAAAACGGGTAAGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 2e-90) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 6 | 6 | 0.05 | 676 | 3 | plot | alignment | MDP0000455346 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||| || || |||||||||||
3' CATCAGAACGGTTATGGAGGGTAAGGGGTATA 5' |
UniProt best hit: sp|Q40392|TMVRN_NICGU (E-value = 4e-169) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 304 | 31.5152 | 0.01 | 646 | 2 | plot | alignment | MDP0000160232 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTAAGGAGGGTAGGGATCTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 9e-114) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 580 | 2.5 | plot | alignment | MDP0000312668 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 4e-40) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 118 | 2 | plot | alignment | MDP0000266458 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATATTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 5e-64) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000266073 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTACGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 2e-113) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000211316 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGAT TTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-122) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 18 | 4.5 | 0.02 | 38 | 3 | plot | alignment | MDP0000367358 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||o||||o||||| |||||||
3' GTCGAGGAAGGGTAGGGTAGGTAAGGAGGGTG 5' |
UniProt: no hits miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 403 | 2.5 | plot | alignment | MDP0000167895 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 5e-124) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 7 | 2.33333 | 0 | 661 | 2.5 | plot | alignment | MDP0000195139 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-145) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 118 | 3 | plot | alignment | MDP0000248321 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||| ||||o||
3' CAACAGAAAGGGTACGGAAGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q9LRR4|R13L1_ARATH (E-value = 2e-17) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 514 | 3 | plot | alignment | MDP0000256429 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||| ||||o||
3' CAACAGAAAGGGTACGGAAGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XBQ9|RGA2_SOLBU (E-value = 9e-31) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 7 | 7 | 0 | 38 | 3 | plot | alignment | MDP0000776953 | 5' TCTTTC-CTATCCCTCCCATTCC 3'
|||||| ||||||||||| |||
3' GAGAGAAAGAGATAGGGAGGGAAAGAGGGACG 5' |
UniProt best hit: sp|Q01402|NDK2_SPIOL (E-value = 6e-97) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000299465 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 4e-122) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000217718 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-32) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
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