HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR482c TCTTTCCTAACCCTCCCATTCC 2 2 0 650 3 plot alignment MDP0000480725
 5'     TCTTTCCTAA-CCCTCCCATTCC      3'
        |||||||o|| |||o|||||| |
 3' CAACAGAAAGGGTTTGGGGGGGTAA GGGTCT 5'
UniProt best hit: sp|Q9SX38|DRL4_ARATH (E-value = 2e-34)
miRBase: no hits
TCTTTCCTAACCCTCCCATTCC
(0 mismatches)

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