HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR156ab GCTCTCTATGCTTCTGTCATC 7 3.5 0.02 440 4 plot alignment MDP0000742828
 5'     GCTCTCTATGCTTCTGTCATC        3'
        ||||| | |||o||||o|||
 3' TTTTCGAGATAAACGGAGACGGTAAGATACTC 5'
UniProt best hit: sp|Q09WV9|RR7_MORIN (E-value = 7e-104)
miRBase: no hits
GCTCTCTATGCTTCTGTCATC
(0 mismatches)
mdm-MIR156ab GCTCTCTATGCTTCTGTCATC 9 9 0.05 1391 3 plot alignment MDP0000224116
 5'     GCTCTCTATGCTTCTGTCATC        3'
        ||o|| ||||||o|| |||||
 3' TCTACGGGATATACGAGGA-AGTAGCATGTTC 5'
UniProt best hit: sp|Q8LBH2|CAP8_ARATH (E-value = 0.0)
miRBase: no hits
GCTCTCTATGCTTCTGTCATC
(0 mismatches)

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