name |
sequence |
fragment abundance |
weighted fragment abundance |
p-value |
cleavage position |
alignment score |
plot |
alignment |
transcript name |
duplex |
BLAST search |
most similar mature |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 4 | 2 | 0 | 1300 | 2 | plot | alignment | MDP0000130802 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o|||||||||||||o
3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 7 | 2.33333 | 0 | 1267 | 0.5 | plot | alignment | MDP0000296716 | 5' AGAATCTTGATGATGCTGCAG 3'
||||||o||||||||||||||
3' TTACTCTTAGGACTACTACGACGTCATCTCTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 43 | 21.5 | 0 | 1300 | 2 | plot | alignment | MDP0000285955 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o|||||||||||||o
3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 9e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 9 | 4.5 | 0.05 | 124 | 3 | plot | alignment | MDP0000739900 | 5' AGAATCTTGATGATGCTGCAG 3'
|||| | |||||| |||||||
3' CTCTTCTT-GTACTACTTCGACGTCGAACTAA 5' |
UniProt best hit: sp|Q9SZI6|GAT22_ARATH (E-value = 1e-22) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 9 | 4.5 | 0.04 | 127 | 3 | plot | alignment | MDP0000237740 | 5' AGAATCTTGATGATGCTGCAG 3'
|||| | |||||| |||||||
3' CTCTTCTT-GTACTACTTCGACGTCGAACTAA 5' |
UniProt best hit: sp|Q5HZ36|GAT21_ARATH (E-value = 9e-20) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 5 | 5 | 0 | 1273 | 1.5 | plot | alignment | MDP0000200319 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o||||||||||||||
3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5' |
UniProt best hit: sp|P47927|AP2_ARATH (E-value = 3e-89) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
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