HOME miRNA TABLE miRNA DEEP-SEQ IN SILICO TARGETS DEGRADOME TARGETS GOrilla INTRONS DOWNLOADS CONTACT




Malus x domestica: degradome data Filter by mature miRNA sequence or return all


name

sequence

fragment abundance

weighted fragment abundance

p-value

cleavage position

alignment score

plot

alignment

transcript name

duplex

BLAST search

most similar mature

mdm-MIR227N AAGTTCATTCAAACACCATGT 20 6.66667 0.05 1639 3 plot alignment MDP0000173362
 5'    AAG-TTCATTCAAACACCATGT        3'
       ||| |o||||||||||||||o
 3' ACGTTCGAGGTAAGTTTGTGGTATCGGAAGGT 5'
UniProt best hit: sp|Q55FJ2|WDR91_DICDI (E-value = 2e-26)
miRBase: no hits
None
mdm-MIR227N AAGTTCATTCAAACACCATGT 20 6.66667 0.03 106 3.5 plot alignment MDP0000259854
 5'    AAG-TTCATTCAAACACCATGT        3'
       ||| |o||||||||||||||
 3' ACGTTCGAGGTAAGTTTGTGGTAATAGGCAAC 5'
UniProt best hit: sp|Q38845|2AAA_ARATH (E-value = 1e-27)
miRBase: no hits
None

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