(169 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR7121f_MI0023149_88                                             174   5e-45
mdm-MIR7121b_MI0023145_172                                            101   7e-23
mdm-MIR7121a_MI0023144_132                                             94   2e-20
mdm-MIR7121e_MI0023148_121                                             86   4e-18
mdm-MIR7121h_MI0023151_121                                             86   4e-18
mdm-MIR7121d_MI0023147_121                                             86   4e-18
mdm-MIR7121c_MI0023146_135                                             68   9e-13
mdm-MIR7121g_MI0023150_100                                             60   2e-10

>mdm-MIR7121f_MI0023149_88
          Length = 88

 Score =  174 bits (88), Expect = 5e-45
 Identities = 88/88 (100%)
 Strand = Plus / Plus

                                                                       
Query: 42  tcctcttggtgatcgccctgccggccttccggattcgggaacttctggattcagggcctg 101
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcctcttggtgatcgccctgccggccttccggattcgggaacttctggattcagggcctg 60

                                       
Query: 102 catatggacatggcgattagcaaaggga 129
           ||||||||||||||||||||||||||||
Sbjct: 61  catatggacatggcgattagcaaaggga 88


>mdm-MIR7121b_MI0023145_172
          Length = 172

 Score =  101 bits (51), Expect = 7e-23
 Identities = 130/157 (82%), Gaps = 17/157 (10%)
 Strand = Plus / Plus

                                                                       
Query: 13  ccgccgtagaaatattactgttaccatcctcctcttggtgatcgccctgccggccttccg 72
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||        
Sbjct: 23  ccgccgtagaaatattactattaccatcctcctcttggtgatcgccctgtcgc------- 75

                                                                       
Query: 73  gattcgggaacttctggattcagggcctgcatatggacatggcgattagcaaagggatga 132
            ||  ||   ||||||||||||||||||| |      || || ||||| |||||||||||
Sbjct: 76  -atatgg---cttctggattcagggcctgta------cagggtgattaccaaagggatga 125

                                                
Query: 133 cggtaatatttaattcatgatgttggtaaactcgtcg 169
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 126 cggtaatatttaattcatgatgttggcaaactcgtcg 162


>mdm-MIR7121a_MI0023144_132
          Length = 132

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 121/146 (82%), Gaps = 16/146 (10%)
 Strand = Plus / Plus

                                                                       
Query: 13  ccgccgtagaaatattactgttaccatcctcctcttggtgatcgccctgccggccttccg 72
           ||||||||||||||||||| |||||||||||||||||||||||||||||      | || 
Sbjct: 2   ccgccgtagaaatattactattaccatcctcctcttggtgatcgccctg------tccca 55

                                                                       
Query: 73  gattcgggaacttctggattcagggcctgcatatggacatggcgattagcaaagggatga 132
            ||    |  ||||||||||||||||||||      ||| || ||||| |||||||||||
Sbjct: 56  tat----ggccttctggattcagggcctgc------acagggtgattaacaaagggatga 105

                                     
Query: 133 cggtaatatttaattcatgatgttgg 158
           ||||||||||||||||||||||||||
Sbjct: 106 cggtaatatttaattcatgatgttgg 131


>mdm-MIR7121e_MI0023148_121
          Length = 121

 Score = 85.7 bits (43), Expect = 4e-18
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 78  gggaacttctggattcagggcctgcatatggacatggcgattagcaaagggatgacggta 137
           |||||||||||||||||||||||||||||||||| || | ||| ||| ||||||||||||
Sbjct: 59  gggaacttctggattcagggcctgcatatggacagggtggttaccaatgggatgacggta 118

              
Query: 138 ata 140
           |||
Sbjct: 119 ata 121


>mdm-MIR7121h_MI0023151_121
          Length = 121

 Score = 85.7 bits (43), Expect = 4e-18
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 78  gggaacttctggattcagggcctgcatatggacatggcgattagcaaagggatgacggta 137
           |||||||||||||||||||||||||||||||||| || | ||| ||| ||||||||||||
Sbjct: 59  gggaacttctggattcagggcctgcatatggacagggtggttaccaatgggatgacggta 118

              
Query: 138 ata 140
           |||
Sbjct: 119 ata 121


>mdm-MIR7121d_MI0023147_121
          Length = 121

 Score = 85.7 bits (43), Expect = 4e-18
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                       
Query: 78  gggaacttctggattcagggcctgcatatggacatggcgattagcaaagggatgacggta 137
           |||||||||||||||||||||||||||||||||| || | ||| ||| ||||||||||||
Sbjct: 59  gggaacttctggattcagggcctgcatatggacagggtggttaccaatgggatgacggta 118

              
Query: 138 ata 140
           |||
Sbjct: 119 ata 121


>mdm-MIR7121c_MI0023146_135
          Length = 135

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 83  cttctggattcagggcctgcatatggacatggcgattagcaaagggatgacggtaata 140
           ||||||||||||||| ||||||||||||| || ||||| ||| | |||||||||||||
Sbjct: 78  cttctggattcagggtctgcatatggacagggtgattaccaaggtgatgacggtaata 135



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 33 ttaccatcctcctcttggtgatcgccctg 61
          |||||||| ||||||||||||||||||||
Sbjct: 3  ttaccatcktcctcttggtgatcgccctg 31



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 83  cttctggattcagggcctgcatatggaca 111
           ||||||||||||||| |||||||||||||
Sbjct: 43  cttctggattcagggtctgcatatggaca 71


>mdm-MIR7121g_MI0023150_100
          Length = 100

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 83  cttctggattcagggcctgcatatggacatggcgattagcaaagggatgacggtaata 140
           |||||| ||||||||||||||||| |||| || | ||| ||| |||||||||||||||
Sbjct: 43  cttctgaattcagggcctgcatatcgacagggtggttaccaatgggatgacggtaata 100



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 33 ttaccatcctcctcttggtgatcgccctgcc 63
          ||||| |||||||||||||||||||||||||
Sbjct: 3  ttaccctcctcctcttggtgatcgccctgcc 33


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.