(137 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ptc-MIR319f_MI0002301_Populus_trichocarpa_miR319f_stem-loop_202        72   5e-14
gma-MIR319i_MI0018674_Glycine_max_miR319i_stem-loop_194                68   7e-13
ptc-MIR319g_MI0002302_Populus_trichocarpa_miR319g_stem-loop_204        64   1e-11
tae-MIR319_MI0016453_Triticum_aestivum_miR319_stem-loop_211            48   7e-07
ath-MIR319c_MI0001086_Arabidopsis_thaliana_miR319c_stem-loop_199       46   3e-06
gma-MIR319d_MI0017842_Glycine_max_miR319d_stem-loop_190                44   1e-05
rco-MIR319c_MI0013408_Ricinus_communis_miR319c_stem-loop_188           44   1e-05
ptc-MIR319c_MI0002298_Populus_trichocarpa_miR319c_stem-loop_196        44   1e-05
gma-MIR319c_MI0001789_Glycine_max_miR319c_stem-loop_221                42   4e-05
vvi-MIR319f_MI0006550_Vitis_vinifera_miR319f_stem-loop_193             42   4e-05
ptc-MIR319d_MI0002299_Populus_trichocarpa_miR319d_stem-loop_193        42   4e-05
mdm-MIR319a_MI0023071_195                                              40   2e-04
mdm-MIR319b_MI0023072_193                                              40   2e-04
gma-MIR319e_MI0017843_Glycine_max_miR319e_stem-loop_190                38   7e-04
aly-MIR319c_MI0014520_Arabidopsis_lyrata_miR319c_stem-loop_271         38   7e-04
aly-MIR319d_MI0014633_Arabidopsis_lyrata_miR319d_stem-loop_267         38   7e-04

>ptc-MIR319f_MI0002301_Populus_trichocarpa_miR319f_stem-loop_202
          Length = 202

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 46/48 (95%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                           
Query: 83  tttgctactgtgattgtgtgaatgaagcgggagat-attttacatccc 129
           ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 112 tttgctactgtgattgtgtgaatgatgcgggagataattttacatccc 159



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 14 gttgaagtaactgccgactcattcactcaagcac 47
          |||||| || ||||||||||||||| ||||||||
Sbjct: 51 gttgaattagctgccgactcattcattcaagcac 84


>gma-MIR319i_MI0018674_Glycine_max_miR319i_stem-loop_194
          Length = 194

 Score = 67.9 bits (34), Expect = 7e-13
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 95  attgtgtgaatgaagcgggagatattttacatccctctttct 136
           |||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 116 attgtgtgaatgaagcaggagatattttgcatccctctttct 157


>ptc-MIR319g_MI0002302_Populus_trichocarpa_miR319g_stem-loop_204
          Length = 204

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 83  tttgctactgtgattgtgtgaatgaagcgggagata 118
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 114 tttgctactgtgattgtgtgaatgatgcgggagata 149



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 14 gttgaagtaactgccgactcattcactcaagcact 48
          |||||| || ||||||||||||||| |||||||||
Sbjct: 51 gttgaactagctgccgactcattcattcaagcact 85


>tae-MIR319_MI0016453_Triticum_aestivum_miR319_stem-loop_211
          Length = 211

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 24 ctgccgactcattcactcaagcactcagtaga 55
          |||||||||||||||||| ||||| |||||||
Sbjct: 56 ctgccgactcattcactcgagcacacagtaga 87


>ath-MIR319c_MI0001086_Arabidopsis_thaliana_miR319c_stem-loop_199
          Length = 199

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 92  gtgattgtgtgaatgaagcgggagatatttt 122
           |||| ||||||||||| ||||||||||||||
Sbjct: 119 gtgactgtgtgaatgatgcgggagatatttt 149


>gma-MIR319d_MI0017842_Glycine_max_miR319d_stem-loop_190
          Length = 190

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 95  attgtgtgaatgaagcgggagatattttacatccctctttct 136
           |||||||||||||||| || || ||||| ||||| |||||||
Sbjct: 111 attgtgtgaatgaagcaggggacattttgcatccttctttct 152


>rco-MIR319c_MI0013408_Ricinus_communis_miR319c_stem-loop_188
          Length = 188

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 85  tgctactgtgattgtgtgaatgaagcgggagata 118
           ||||| ||||| ||||||||||| ||||||||||
Sbjct: 104 tgctattgtgaatgtgtgaatgatgcgggagata 137


>ptc-MIR319c_MI0002298_Populus_trichocarpa_miR319c_stem-loop_196
          Length = 196

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 85  tgctactgtgattgtgtgaatgaagcgggagata 118
           ||||| ||||| ||||||||||| ||||||||||
Sbjct: 109 tgctattgtgaatgtgtgaatgatgcgggagata 142


>gma-MIR319c_MI0001789_Glycine_max_miR319c_stem-loop_221
          Length = 221

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  attgtgtgaatgaagcgggag 115
           |||||||||||||||||||||
Sbjct: 125 attgtgtgaatgaagcgggag 145


>vvi-MIR319f_MI0006550_Vitis_vinifera_miR319f_stem-loop_193
          Length = 193

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 87  ctactgtgattgtgtgaatgaagcgggag 115
           ||||||||| ||||||||||| |||||||
Sbjct: 105 ctactgtgaatgtgtgaatgatgcgggag 133


>ptc-MIR319d_MI0002299_Populus_trichocarpa_miR319d_stem-loop_193
          Length = 193

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 85  tgctactgtgattgtgtgaatgaagcgggagat 117
           ||||| ||||| ||||||||||| |||||||||
Sbjct: 106 tgctattgtgaatgtgtgaatgacgcgggagat 138


>mdm-MIR319a_MI0023071_195
          Length = 195

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  tgtgtgaatgaagcgggaga 116
           ||||||||||||||||||||
Sbjct: 115 tgtgtgaatgaagcgggaga 134


>mdm-MIR319b_MI0023072_193
          Length = 193

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  tgtgtgaatgaagcgggaga 116
           ||||||||||||||||||||
Sbjct: 113 tgtgtgaatgaagcgggaga 132


>gma-MIR319e_MI0017843_Glycine_max_miR319e_stem-loop_190
          Length = 190

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 85  tgctactgtgattgtgtgaatgaagcgggag 115
           ||||| ||||| ||||||||||| |||||||
Sbjct: 103 tgctattgtgaatgtgtgaatgatgcgggag 133


>aly-MIR319c_MI0014520_Arabidopsis_lyrata_miR319c_stem-loop_271
          Length = 271

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 92  gtgattgtgtgaatgaagcgggagatatttt 122
           |||| ||| ||||||| ||||||||||||||
Sbjct: 153 gtgactgtatgaatgatgcgggagatatttt 183


>aly-MIR319d_MI0014633_Arabidopsis_lyrata_miR319d_stem-loop_267
          Length = 267

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 92  gtgattgtgtgaatgaagcgggagatatttt 122
           |||| ||| ||||||| ||||||||||||||
Sbjct: 153 gtgactgtatgaatgatgcgggagatatttt 183


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.