(142 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR399i_MI0023113_114                                             226   1e-60
mdm-MIR399j_MI0023114_123                                             198   3e-52
vvi-MIR399b_MI0006574_Vitis_vinifera_miR399b_stem-loop_117             54   1e-08
mdm-MIR399d_MI0023108_137                                              52   5e-08
tcc-MIR399i_MI0017527_Theobroma_cacao_miR399i_stem-loop_157            50   2e-07
pvu-MIR399a_MI0010706_Phaseolus_vulgaris_miR399a_stem-loop_223         50   2e-07
mtr-MIR399l_MI0005606_Medicago_truncatula_miR399l_stem-loop_79         48   7e-07
mtr-MIR399p_MI0005634_Medicago_truncatula_miR399p_stem-loop_79         48   7e-07
ath-MIR399c_MI0001022_Arabidopsis_thaliana_miR399c_stem-loop_114       48   7e-07
osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286               48   7e-07
aly-MIR399c_MI0014590_Arabidopsis_lyrata_miR399c_stem-loop_125         48   7e-07
sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205            48   7e-07
rco-MIR399a_MI0013422_Ricinus_communis_miR399a_stem-loop_93            46   3e-06
vun-MIR399a_MI0019576_Vigna_unguiculata_miR399a_stem-loop_83           46   3e-06
mtr-MIR399o_MI0005610_Medicago_truncatula_miR399o_stem-loop_92         46   3e-06
csi-MIR399b_MI0016713_Citrus_sinensis_miR399b_stem-loop_168            46   3e-06
osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149               44   1e-05
zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207                   44   1e-05
osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110               44   1e-05
zma-MIR399i_MI0013235_Zea_mays_miR399i_stem-loop_91                    44   1e-05
csi-MIR399d_MI0016711_Citrus_sinensis_miR399d_stem-loop_130            44   1e-05
zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175                   44   1e-05
sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136            44   1e-05
sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130            44   1e-05
ath-MIR399b_MI0001021_Arabidopsis_thaliana_miR399b_stem-loop_135       44   1e-05
ptc-MIR399i_MI0002346_Populus_trichocarpa_miR399i_stem-loop_108        44   1e-05
aly-MIR399b_MI0014589_Arabidopsis_lyrata_miR399b_stem-loop_154         44   1e-05
mtr-MIR399b_MI0001743_Medicago_truncatula_miR399b_stem-loop_112        42   4e-05
sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121            42   4e-05
mtr-MIR399d_MI0001744_Medicago_truncatula_miR399d_stem-loop_129        42   4e-05
zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124                   42   4e-05
vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82              42   4e-05
sly-MIR399_MI0009979_Solanum_lycopersicum_miR399_stem-loop_71          40   2e-04
aqc-MIR399_MI0012098_Aquilegia_caerulea_miR399_stem-loop_98            40   2e-04
zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123                   40   2e-04
bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160    40   2e-04
osa-MIR399j_MI0001062_Oryza_sativa_miR399j_stem-loop_106               40   2e-04
zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94                    40   2e-04
tcc-MIR399a_MI0017519_Theobroma_cacao_miR399a_stem-loop_136            40   2e-04
sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93             40   2e-04
vvi-MIR399i_MI0007963_Vitis_vinifera_miR399i_stem-loop_122             40   2e-04
ptc-MIR399h_MI0002345_Populus_trichocarpa_miR399h_stem-loop_132        38   7e-04
ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101        38   7e-04
mtr-MIR399n_MI0005609_Medicago_truncatula_miR399n_stem-loop_100        38   7e-04
mtr-MIR399h_MI0005589_Medicago_truncatula_miR399h_stem-loop_90         38   7e-04
ptc-MIR399l_MI0002349_Populus_trichocarpa_miR399l_stem-loop_109        38   7e-04
mtr-MIR399m_MI0005608_Medicago_truncatula_miR399m_stem-loop_85         38   7e-04
mtr-MIR399i_MI0005590_Medicago_truncatula_miR399i_stem-loop_90         38   7e-04
csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154            38   7e-04
tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112            38   7e-04
rco-MIR399d_MI0013425_Ricinus_communis_miR399d_stem-loop_103           38   7e-04
vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90              38   7e-04
ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98          38   7e-04
csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149            38   7e-04
mtr-MIR399c_MI0001748_Medicago_truncatula_miR399c_stem-loop_119        38   7e-04

>mdm-MIR399i_MI0023113_114
          Length = 114

 Score =  226 bits (114), Expect = 1e-60
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 16  taagcaaatcagtcatagggctcctccctcttggcaggcactggtgaatgatgcaactac 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taagcaaatcagtcatagggctcctccctcttggcaggcactggtgaatgatgcaactac 60

                                                                 
Query: 76  aatcactttcattgacttgccaaaggagagttgccctgcgattgctttagctta 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatcactttcattgacttgccaaaggagagttgccctgcgattgctttagctta 114


>mdm-MIR399j_MI0023114_123
          Length = 123

 Score =  198 bits (100), Expect = 3e-52
 Identities = 115/120 (95%)
 Strand = Plus / Plus

                                                                       
Query: 14  aataagcaaatcagtcatagggctcctccctcttggcaggcactggtgaatgatgcaact 73
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 4   aataagcaaatcagtcatagggctcctccctcttggcaggcactggtgtatggtgcaact 63

                                                                       
Query: 74  acaatcactttcattgacttgccaaaggagagttgccctgcgattgctttagcttaatga 133
           ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 64  acagtcactttcattgacctgccaaaggagagttgccctgcgattgctttggcttaatga 123


>vvi-MIR399b_MI0006574_Vitis_vinifera_miR399b_stem-loop_117
          Length = 117

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 88  tgacttgccaaaggagagttgccctgcgattgctt 122
           |||||||||||||||||||||||||| || |||||
Sbjct: 82  tgacttgccaaaggagagttgccctgtgactgctt 116



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 23 atcagtcatagggctcctccctcttggcaggcactgg 59
          |||| ||||||||| ||||  ||||||||||||||||
Sbjct: 1  atcaatcatagggcacctctttcttggcaggcactgg 37


>mdm-MIR399d_MI0023108_137
          Length = 137

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 88  tgacttgccaaaggagagttgccctgcgattgctttagctta 129
           |||| |||||||||||||||||||| ||| |||||| |||||
Sbjct: 96  tgacctgccaaaggagagttgccctacgactgcttttgctta 137


>tcc-MIR399i_MI0017527_Theobroma_cacao_miR399i_stem-loop_157
          Length = 157

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 89  gacttgccaaaggagagttgccctg 113
           |||||||||||||||||||||||||
Sbjct: 113 gacttgccaaaggagagttgccctg 137


>pvu-MIR399a_MI0010706_Phaseolus_vulgaris_miR399a_stem-loop_223
          Length = 223

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 91  cttgccaaaggagagttgccctgcgattgctttagcttaat 131
           |||||||||||||||||||||||    ||||||||||||||
Sbjct: 87  cttgccaaaggagagttgccctgttgctgctttagcttaat 127


>mtr-MIR399l_MI0005606_Medicago_truncatula_miR399l_stem-loop_79
          Length = 79

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  acttgccaaaggagagttgccctg 113
           ||||||||||||||||||||||||
Sbjct: 51  acttgccaaaggagagttgccctg 74


>mtr-MIR399p_MI0005634_Medicago_truncatula_miR399p_stem-loop_79
          Length = 79

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  acttgccaaaggagagttgccctg 113
           ||||||||||||||||||||||||
Sbjct: 51  acttgccaaaggagagttgccctg 74


>ath-MIR399c_MI0001022_Arabidopsis_thaliana_miR399c_stem-loop_114
          Length = 114

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  acttgccaaaggagagttgccctg 113
           ||||||||||||||||||||||||
Sbjct: 81  acttgccaaaggagagttgccctg 104


>osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286
          Length = 286

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 93  tgccaaaggagagttgccctgcga 116
           ||||||||||||||||||||||||
Sbjct: 256 tgccaaaggagagttgccctgcga 279


>aly-MIR399c_MI0014590_Arabidopsis_lyrata_miR399c_stem-loop_125
          Length = 125

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  acttgccaaaggagagttgccctg 113
           ||||||||||||||||||||||||
Sbjct: 86  acttgccaaaggagagttgccctg 109


>sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205
          Length = 205

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 93  tgccaaaggagagttgccctgcga 116
           ||||||||||||||||||||||||
Sbjct: 166 tgccaaaggagagttgccctgcga 189


>rco-MIR399a_MI0013422_Ricinus_communis_miR399a_stem-loop_93
          Length = 93

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  cttgccaaaggagagttgccctg 113
           |||||||||||||||||||||||
Sbjct: 66  cttgccaaaggagagttgccctg 88


>vun-MIR399a_MI0019576_Vigna_unguiculata_miR399a_stem-loop_83
          Length = 83

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  cttgccaaaggagagttgccctg 113
           |||||||||||||||||||||||
Sbjct: 56  cttgccaaaggagagttgccctg 78


>mtr-MIR399o_MI0005610_Medicago_truncatula_miR399o_stem-loop_92
          Length = 92

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 90  acttgccaaaggagagttgccctgcga 116
           |||||||||||||||| ||||||||||
Sbjct: 64  acttgccaaaggagagctgccctgcga 90


>csi-MIR399b_MI0016713_Citrus_sinensis_miR399b_stem-loop_168
          Length = 168

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 82  tttcattgacttgccaaaggagagttgccct 112
           ||||| |||| ||||||||||||||||||||
Sbjct: 114 tttcaatgacctgccaaaggagagttgccct 144


>osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149
          Length = 149

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tgccaaaggagagttgccctgcgatt 118
           |||||||||||| |||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgcgatt 144


>zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207
          Length = 207

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tgccaaaggagagttgccctgcgatt 118
           |||||||||||| |||||||||||||
Sbjct: 168 tgccaaaggagaattgccctgcgatt 193


>osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110
          Length = 110

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tgccaaaggagagttgccctgcgatt 118
           |||||||||||| |||||||||||||
Sbjct: 80  tgccaaaggagaattgccctgcgatt 105


>zma-MIR399i_MI0013235_Zea_mays_miR399i_stem-loop_91
          Length = 91

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  tgccaaaggagagttgccctgc 114
           ||||||||||||||||||||||
Sbjct: 70  tgccaaaggagagttgccctgc 91


>csi-MIR399d_MI0016711_Citrus_sinensis_miR399d_stem-loop_130
          Length = 130

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 93  tgccaaaggagagttgccctgcgattgctt 122
           ||||||||||||||||||||| || |||||
Sbjct: 100 tgccaaaggagagttgccctgtgactgctt 129


>zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175
          Length = 175

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  tgccaaaggagagttgccctgc 114
           ||||||||||||||||||||||
Sbjct: 154 tgccaaaggagagttgccctgc 175


>sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136
          Length = 136

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tgccaaaggagagttgccctgcgatt 118
           |||||||||||| |||||||||||||
Sbjct: 97  tgccaaaggagaattgccctgcgatt 122


>sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130
          Length = 130

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  tgccaaaggagagttgccctgcgatt 118
           |||||||||||| |||||||||||||
Sbjct: 91  tgccaaaggagaattgccctgcgatt 116


>ath-MIR399b_MI0001021_Arabidopsis_thaliana_miR399b_stem-loop_135
          Length = 135

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  tgacttgccaaaggagagttgccctg 113
           |||| |||||||||||||||||||||
Sbjct: 100 tgacctgccaaaggagagttgccctg 125


>ptc-MIR399i_MI0002346_Populus_trichocarpa_miR399i_stem-loop_108
          Length = 108

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  cttgccaaaggagagttgccct 112
           ||||||||||||||||||||||
Sbjct: 77  cttgccaaaggagagttgccct 98


>aly-MIR399b_MI0014589_Arabidopsis_lyrata_miR399b_stem-loop_154
          Length = 154

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 88  tgacttgccaaaggagagttgccctg 113
           |||| |||||||||||||||||||||
Sbjct: 101 tgacctgccaaaggagagttgccctg 126


>mtr-MIR399b_MI0001743_Medicago_truncatula_miR399b_stem-loop_112
          Length = 112

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                    
Query: 90  acttgccaaaggagagttgccctgcgattgctttagcttaa 130
           |||||||||||||||| ||||||| || || ||||||||||
Sbjct: 70  acttgccaaaggagagctgccctgtgagtg-tttagcttaa 109


>sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121
          Length = 121

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tgccaaaggagagttgccctg 113
           |||||||||||||||||||||
Sbjct: 82  tgccaaaggagagttgccctg 102


>mtr-MIR399d_MI0001744_Medicago_truncatula_miR399d_stem-loop_129
          Length = 129

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 taagcaaatcagtcatagggc 36
          |||||||||||||||||||||
Sbjct: 6  taagcaaatcagtcatagggc 26



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                    
Query: 90  acttgccaaaggagagttgccctgcgattgctttagcttaa 130
           |||||||||||||||| |||||| ||| || ||||||||||
Sbjct: 87  acttgccaaaggagagctgccctacgagtg-tttagcttaa 126


>zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124
          Length = 124

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tgccaaaggagagttgccctg 113
           |||||||||||||||||||||
Sbjct: 85  tgccaaaggagagttgccctg 105


>vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82
          Length = 82

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 93  tgccaaaggagagttgccctg 113
           |||||||||||||||||||||
Sbjct: 52  tgccaaaggagagttgccctg 72


>sly-MIR399_MI0009979_Solanum_lycopersicum_miR399_stem-loop_71
          Length = 71

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tgccaaaggagagttgccct 112
           ||||||||||||||||||||
Sbjct: 51  tgccaaaggagagttgccct 70


>aqc-MIR399_MI0012098_Aquilegia_caerulea_miR399_stem-loop_98
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tgccaaaggagagttgccct 112
           ||||||||||||||||||||
Sbjct: 72  tgccaaaggagagttgccct 91


>zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123
          Length = 123

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  cttgccaaaggagagttgccctgc 114
           |||||||||||||| |||||||||
Sbjct: 82  cttgccaaaggagaattgccctgc 105


>bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160
          Length = 160

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  cttgccaaaggagagttgccctgc 114
           |||||||||||||| |||||||||
Sbjct: 108 cttgccaaaggagaattgccctgc 131


>osa-MIR399j_MI0001062_Oryza_sativa_miR399j_stem-loop_106
          Length = 106

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  tgccaaaggagagttgccct 112
           ||||||||||||||||||||
Sbjct: 76  tgccaaaggagagttgccct 95


>zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  cttgccaaaggagagttgccctgc 114
           |||||||||||||| |||||||||
Sbjct: 71  cttgccaaaggagaattgccctgc 94


>tcc-MIR399a_MI0017519_Theobroma_cacao_miR399a_stem-loop_136
          Length = 136

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  gccaaaggagagttgccctg 113
           ||||||||||||||||||||
Sbjct: 97  gccaaaggagagttgccctg 116


>sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93
          Length = 93

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 91  cttgccaaaggagagttgccctgc 114
           |||||||||||||| |||||||||
Sbjct: 69  cttgccaaaggagaattgccctgc 92


>vvi-MIR399i_MI0007963_Vitis_vinifera_miR399i_stem-loop_122
          Length = 122

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  gccaaaggagagttgccctg 113
           ||||||||||||||||||||
Sbjct: 93  gccaaaggagagttgccctg 112


>ptc-MIR399h_MI0002345_Populus_trichocarpa_miR399h_stem-loop_132
          Length = 132

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 91  cttgccaaaggagagttgccctg 113
           ||||||||||||||||| |||||
Sbjct: 101 cttgccaaaggagagtttccctg 123


>ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101
          Length = 101

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 71  ttgccaaaggagaattgccctgc 93


>mtr-MIR399n_MI0005609_Medicago_truncatula_miR399n_stem-loop_100
          Length = 100

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 90  acttgccaaaggagagttgccct 112
           |||||||||||||||| ||||||
Sbjct: 72  acttgccaaaggagagctgccct 94


>mtr-MIR399h_MI0005589_Medicago_truncatula_miR399h_stem-loop_90
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 64  ttgccaaaggagatttgccctgc 86


>ptc-MIR399l_MI0002349_Populus_trichocarpa_miR399l_stem-loop_109
          Length = 109

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 94  gccaaaggagagttgccct 112
           |||||||||||||||||||
Sbjct: 82  gccaaaggagagttgccct 100


>mtr-MIR399m_MI0005608_Medicago_truncatula_miR399m_stem-loop_85
          Length = 85

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 90  acttgccaaaggagagttgccct 112
           |||||||||||||||| ||||||
Sbjct: 57  acttgccaaaggagagctgccct 79


>mtr-MIR399i_MI0005590_Medicago_truncatula_miR399i_stem-loop_90
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 64  ttgccaaaggagatttgccctgc 86


>csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154
          Length = 154

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 17  ttgccaaaggagaattgccctgc 39


>tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112
          Length = 112

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 71  ttgccaaaggagaattgccctgc 93


>rco-MIR399d_MI0013425_Ricinus_communis_miR399d_stem-loop_103
          Length = 103

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 91  cttgccaaaggagagttgccctg 113
           ||||||||||||||| |||||||
Sbjct: 76  cttgccaaaggagagctgccctg 98


>vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 59  ttgccaaaggagaattgccctgc 81


>ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98
          Length = 98

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 66  ttgccaaaggagatttgccctgc 88


>csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149
          Length = 149

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 108 ttgccaaaggagaattgccctgc 130


>mtr-MIR399c_MI0001748_Medicago_truncatula_miR399c_stem-loop_119
          Length = 119

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ttgccaaaggagagttgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 79  ttgccaaaggagatttgccctgc 101


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.