(162 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR399j_MI0023114_123                                             244   7e-66
mdm-MIR399i_MI0023113_114                                             186   1e-48
mdm-MIR399d_MI0023108_137                                              60   2e-10
csi-MIR399b_MI0016713_Citrus_sinensis_miR399b_stem-loop_168            54   1e-08
osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286               52   5e-08
ath-MIR399b_MI0001021_Arabidopsis_thaliana_miR399b_stem-loop_135       52   5e-08
aly-MIR399b_MI0014589_Arabidopsis_lyrata_miR399b_stem-loop_154         52   5e-08
sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205            52   5e-08
zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175                   48   8e-07
vvi-MIR399b_MI0006574_Vitis_vinifera_miR399b_stem-loop_117             46   3e-06
osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149               44   1e-05
zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207                   44   1e-05
osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110               44   1e-05
zma-MIR399i_MI0013235_Zea_mays_miR399i_stem-loop_91                    44   1e-05
csi-MIR399d_MI0016711_Citrus_sinensis_miR399d_stem-loop_130            44   1e-05
sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136            44   1e-05
sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121            44   1e-05
sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130            44   1e-05
zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124                   44   1e-05
vvi-MIR399i_MI0007963_Vitis_vinifera_miR399i_stem-loop_122             44   1e-05
vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82              44   1e-05
aqc-MIR399_MI0012098_Aquilegia_caerulea_miR399_stem-loop_98            42   5e-05
mtr-MIR399l_MI0005606_Medicago_truncatula_miR399l_stem-loop_79         42   5e-05
rco-MIR399a_MI0013422_Ricinus_communis_miR399a_stem-loop_93            42   5e-05
vun-MIR399a_MI0019576_Vigna_unguiculata_miR399a_stem-loop_83           42   5e-05
mtr-MIR399p_MI0005634_Medicago_truncatula_miR399p_stem-loop_79         42   5e-05
ath-MIR399c_MI0001022_Arabidopsis_thaliana_miR399c_stem-loop_114       42   5e-05
tcc-MIR399i_MI0017527_Theobroma_cacao_miR399i_stem-loop_157            42   5e-05
aly-MIR399c_MI0014590_Arabidopsis_lyrata_miR399c_stem-loop_125         42   5e-05
osa-MIR399j_MI0001062_Oryza_sativa_miR399j_stem-loop_106               42   5e-05
mtr-MIR399d_MI0001744_Medicago_truncatula_miR399d_stem-loop_129        42   5e-05
pvu-MIR399a_MI0010706_Phaseolus_vulgaris_miR399a_stem-loop_223         42   5e-05
sly-MIR399_MI0009979_Solanum_lycopersicum_miR399_stem-loop_71          40   2e-04
sbi-MIR399b_MI0001546_Sorghum_bicolor_miR399b_stem-loop_121            40   2e-04
osa-MIR399i_MI0001061_Oryza_sativa_miR399i_stem-loop_116               40   2e-04
sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132            40   2e-04
mtr-MIR399o_MI0005610_Medicago_truncatula_miR399o_stem-loop_92         40   2e-04
tcc-MIR399a_MI0017519_Theobroma_cacao_miR399a_stem-loop_136            40   2e-04
ptc-MIR399i_MI0002346_Populus_trichocarpa_miR399i_stem-loop_108        40   2e-04
mtr-MIR399f_MI0005587_Medicago_truncatula_miR399f_stem-loop_104        38   8e-04
vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85           38   8e-04
mtr-MIR399a_MI0001749_Medicago_truncatula_miR399a_stem-loop_134        38   8e-04
osa-MIR399g_MI0001059_Oryza_sativa_miR399g_stem-loop_119               38   8e-04
ptc-MIR399l_MI0002349_Populus_trichocarpa_miR399l_stem-loop_109        38   8e-04
mtr-MIR399e_MI0001750_Medicago_truncatula_miR399e_stem-loop_134        38   8e-04
mdm-MIR399b_MI0023106_107                                              38   8e-04
mdm-MIR399c_MI0023107_115                                              38   8e-04
ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94         38   8e-04
mdm-MIR399a_MI0023105_115                                              38   8e-04
ghr-MIR399c_MI0013556_Gossypium_hirsutum_miR399c_stem-loop_74          38   8e-04

>mdm-MIR399j_MI0023114_123
          Length = 123

 Score =  244 bits (123), Expect = 7e-66
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                       
Query: 21  tctaataagcaaatcagtcatagggctcctccctcttggcaggcactggtgtatggtgca 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tctaataagcaaatcagtcatagggctcctccctcttggcaggcactggtgtatggtgca 60

                                                                       
Query: 81  actacagtcactttcattgacctgccaaaggagagttgccctgcgattgctttggcttaa 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  actacagtcactttcattgacctgccaaaggagagttgccctgcgattgctttggcttaa 120

              
Query: 141 tga 143
           |||
Sbjct: 121 tga 123


>mdm-MIR399i_MI0023113_114
          Length = 114

 Score =  186 bits (94), Expect = 1e-48
 Identities = 109/114 (95%)
 Strand = Plus / Plus

                                                                       
Query: 26  taagcaaatcagtcatagggctcctccctcttggcaggcactggtgtatggtgcaactac 85
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 1   taagcaaatcagtcatagggctcctccctcttggcaggcactggtgaatgatgcaactac 60

                                                                 
Query: 86  agtcactttcattgacctgccaaaggagagttgccctgcgattgctttggctta 139
           | |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 61  aatcactttcattgacttgccaaaggagagttgccctgcgattgctttagctta 114


>mdm-MIR399d_MI0023108_137
          Length = 137

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 98  tgacctgccaaaggagagttgccctgcgattgctttggctta 139
           ||||||||||||||||||||||||| ||| |||||| |||||
Sbjct: 96  tgacctgccaaaggagagttgccctacgactgcttttgctta 137


>csi-MIR399b_MI0016713_Citrus_sinensis_miR399b_stem-loop_168
          Length = 168

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 92  tttcattgacctgccaaaggagagttgccct 122
           ||||| |||||||||||||||||||||||||
Sbjct: 114 tttcaatgacctgccaaaggagagttgccct 144


>osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286
          Length = 286

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 101 cctgccaaaggagagttgccctgcga 126
           ||||||||||||||||||||||||||
Sbjct: 254 cctgccaaaggagagttgccctgcga 279


>ath-MIR399b_MI0001021_Arabidopsis_thaliana_miR399b_stem-loop_135
          Length = 135

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 98  tgacctgccaaaggagagttgccctg 123
           ||||||||||||||||||||||||||
Sbjct: 100 tgacctgccaaaggagagttgccctg 125


>aly-MIR399b_MI0014589_Arabidopsis_lyrata_miR399b_stem-loop_154
          Length = 154

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 98  tgacctgccaaaggagagttgccctg 123
           ||||||||||||||||||||||||||
Sbjct: 101 tgacctgccaaaggagagttgccctg 126


>sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205
          Length = 205

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 101 cctgccaaaggagagttgccctgcga 126
           ||||||||||||||||||||||||||
Sbjct: 164 cctgccaaaggagagttgccctgcga 189


>zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175
          Length = 175

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 101 cctgccaaaggagagttgccctgc 124
           ||||||||||||||||||||||||
Sbjct: 152 cctgccaaaggagagttgccctgc 175


>vvi-MIR399b_MI0006574_Vitis_vinifera_miR399b_stem-loop_117
          Length = 117

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 98  tgacctgccaaaggagagttgccctgcgattgctt 132
           |||| ||||||||||||||||||||| || |||||
Sbjct: 82  tgacttgccaaaggagagttgccctgtgactgctt 116



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                               
Query: 33 atcagtcatagggctcctccctcttggcaggcactgg 69
          |||| ||||||||| ||||  ||||||||||||||||
Sbjct: 1  atcaatcatagggcacctctttcttggcaggcactgg 37


>osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149
          Length = 149

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 tgccaaaggagagttgccctgcgatt 128
           |||||||||||| |||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgcgatt 144


>zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207
          Length = 207

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 tgccaaaggagagttgccctgcgatt 128
           |||||||||||| |||||||||||||
Sbjct: 168 tgccaaaggagaattgccctgcgatt 193


>osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110
          Length = 110

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 tgccaaaggagagttgccctgcgatt 128
           |||||||||||| |||||||||||||
Sbjct: 80  tgccaaaggagaattgccctgcgatt 105


>zma-MIR399i_MI0013235_Zea_mays_miR399i_stem-loop_91
          Length = 91

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 103 tgccaaaggagagttgccctgc 124
           ||||||||||||||||||||||
Sbjct: 70  tgccaaaggagagttgccctgc 91


>csi-MIR399d_MI0016711_Citrus_sinensis_miR399d_stem-loop_130
          Length = 130

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 103 tgccaaaggagagttgccctgcgattgctt 132
           ||||||||||||||||||||| || |||||
Sbjct: 100 tgccaaaggagagttgccctgtgactgctt 129


>sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136
          Length = 136

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 tgccaaaggagagttgccctgcgatt 128
           |||||||||||| |||||||||||||
Sbjct: 97  tgccaaaggagaattgccctgcgatt 122


>sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121
          Length = 121

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 102 ctgccaaaggagagttgccctg 123
           ||||||||||||||||||||||
Sbjct: 81  ctgccaaaggagagttgccctg 102


>sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130
          Length = 130

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 103 tgccaaaggagagttgccctgcgatt 128
           |||||||||||| |||||||||||||
Sbjct: 91  tgccaaaggagaattgccctgcgatt 116


>zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124
          Length = 124

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 102 ctgccaaaggagagttgccctg 123
           ||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagagttgccctg 105


>vvi-MIR399i_MI0007963_Vitis_vinifera_miR399i_stem-loop_122
          Length = 122

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 98  tgacctgccaaaggagagttgccctg 123
           ||||| ||||||||||||||||||||
Sbjct: 87  tgacccgccaaaggagagttgccctg 112


>vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82
          Length = 82

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 102 ctgccaaaggagagttgccctg 123
           ||||||||||||||||||||||
Sbjct: 51  ctgccaaaggagagttgccctg 72


>aqc-MIR399_MI0012098_Aquilegia_caerulea_miR399_stem-loop_98
          Length = 98

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 102 ctgccaaaggagagttgccct 122
           |||||||||||||||||||||
Sbjct: 71  ctgccaaaggagagttgccct 91


>mtr-MIR399l_MI0005606_Medicago_truncatula_miR399l_stem-loop_79
          Length = 79

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 54  tgccaaaggagagttgccctg 74


>rco-MIR399a_MI0013422_Ricinus_communis_miR399a_stem-loop_93
          Length = 93

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 68  tgccaaaggagagttgccctg 88


>vun-MIR399a_MI0019576_Vigna_unguiculata_miR399a_stem-loop_83
          Length = 83

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 58  tgccaaaggagagttgccctg 78


>mtr-MIR399p_MI0005634_Medicago_truncatula_miR399p_stem-loop_79
          Length = 79

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 54  tgccaaaggagagttgccctg 74


>ath-MIR399c_MI0001022_Arabidopsis_thaliana_miR399c_stem-loop_114
          Length = 114

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 84  tgccaaaggagagttgccctg 104


>tcc-MIR399i_MI0017527_Theobroma_cacao_miR399i_stem-loop_157
          Length = 157

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 117 tgccaaaggagagttgccctg 137


>aly-MIR399c_MI0014590_Arabidopsis_lyrata_miR399c_stem-loop_125
          Length = 125

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 89  tgccaaaggagagttgccctg 109


>osa-MIR399j_MI0001062_Oryza_sativa_miR399j_stem-loop_106
          Length = 106

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 102 ctgccaaaggagagttgccct 122
           |||||||||||||||||||||
Sbjct: 75  ctgccaaaggagagttgccct 95


>mtr-MIR399d_MI0001744_Medicago_truncatula_miR399d_stem-loop_129
          Length = 129

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 26 taagcaaatcagtcatagggc 46
          |||||||||||||||||||||
Sbjct: 6  taagcaaatcagtcatagggc 26


>pvu-MIR399a_MI0010706_Phaseolus_vulgaris_miR399a_stem-loop_223
          Length = 223

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 tgccaaaggagagttgccctg 123
           |||||||||||||||||||||
Sbjct: 89  tgccaaaggagagttgccctg 109


>sly-MIR399_MI0009979_Solanum_lycopersicum_miR399_stem-loop_71
          Length = 71

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 tgccaaaggagagttgccct 122
           ||||||||||||||||||||
Sbjct: 51  tgccaaaggagagttgccct 70


>sbi-MIR399b_MI0001546_Sorghum_bicolor_miR399b_stem-loop_121
          Length = 121

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 cctgccaaaggagagttgccctgc 124
           ||||||||||||||| ||||||||
Sbjct: 80  cctgccaaaggagagctgccctgc 103


>osa-MIR399i_MI0001061_Oryza_sativa_miR399i_stem-loop_116
          Length = 116

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 cctgccaaaggagagttgccctgc 124
           ||||||||||||||| ||||||||
Sbjct: 84  cctgccaaaggagagctgccctgc 107


>sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132
          Length = 132

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 101 cctgccaaaggagagttgccctgc 124
           |||||||||||||| |||||||||
Sbjct: 91  cctgccaaaggagaattgccctgc 114


>mtr-MIR399o_MI0005610_Medicago_truncatula_miR399o_stem-loop_92
          Length = 92

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 103 tgccaaaggagagttgccctgcga 126
           ||||||||||||| ||||||||||
Sbjct: 67  tgccaaaggagagctgccctgcga 90


>tcc-MIR399a_MI0017519_Theobroma_cacao_miR399a_stem-loop_136
          Length = 136

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 104 gccaaaggagagttgccctg 123
           ||||||||||||||||||||
Sbjct: 97  gccaaaggagagttgccctg 116


>ptc-MIR399i_MI0002346_Populus_trichocarpa_miR399i_stem-loop_108
          Length = 108

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 tgccaaaggagagttgccct 122
           ||||||||||||||||||||
Sbjct: 79  tgccaaaggagagttgccct 98


>mtr-MIR399f_MI0005587_Medicago_truncatula_miR399f_stem-loop_104
          Length = 104

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 102 ctgccaaaggagagttgccctgcgatt 128
           ||||||||||||| |||||| ||||||
Sbjct: 78  ctgccaaaggagatttgcccagcgatt 104


>vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85
          Length = 85

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctgccaaaggagagttgccctgc 124
           ||||||||||||| |||||||||
Sbjct: 59  ctgccaaaggagaattgccctgc 81


>mtr-MIR399a_MI0001749_Medicago_truncatula_miR399a_stem-loop_134
          Length = 134

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 102 ctgccaaaggagagttgccctgcgatt 128
           ||||||||||||| |||||| ||||||
Sbjct: 94  ctgccaaaggagatttgcccagcgatt 120


>osa-MIR399g_MI0001059_Oryza_sativa_miR399g_stem-loop_119
          Length = 119

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 102 ctgccaaaggagagttgccctgcgatt 128
           ||||||||||||| |||||| ||||||
Sbjct: 88  ctgccaaaggagatttgcccagcgatt 114


>ptc-MIR399l_MI0002349_Populus_trichocarpa_miR399l_stem-loop_109
          Length = 109

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 104 gccaaaggagagttgccct 122
           |||||||||||||||||||
Sbjct: 82  gccaaaggagagttgccct 100


>mtr-MIR399e_MI0001750_Medicago_truncatula_miR399e_stem-loop_134
          Length = 134

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 102 ctgccaaaggagagttgccctgcgatt 128
           ||||||||||||| |||||| ||||||
Sbjct: 94  ctgccaaaggagatttgcccagcgatt 120


>mdm-MIR399b_MI0023106_107
          Length = 107

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctgccaaaggagagttgccctgc 124
           ||||||||||||| |||||||||
Sbjct: 79  ctgccaaaggagaattgccctgc 101


>mdm-MIR399c_MI0023107_115
          Length = 115

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctgccaaaggagagttgccctgc 124
           ||||||||||||| |||||||||
Sbjct: 87  ctgccaaaggagaattgccctgc 109


>ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94
          Length = 94

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctgccaaaggagagttgccctgc 124
           ||||||||||||| |||||||||
Sbjct: 64  ctgccaaaggagaattgccctgc 86


>mdm-MIR399a_MI0023105_115
          Length = 115

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 102 ctgccaaaggagagttgccctgc 124
           ||||||||||||| |||||||||
Sbjct: 87  ctgccaaaggagaattgccctgc 109


>ghr-MIR399c_MI0013556_Gossypium_hirsutum_miR399c_stem-loop_74
          Length = 74

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 acctgccaaaggagagttg 118
           |||||||||||||||||||
Sbjct: 51  acctgccaaaggagagttg 69


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.