(130 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR2118c_MI0023140_103                                            204   5e-54
mdm-MIR2118b_MI0023139_106                                            182   2e-47
mdm-MIR2118a_MI0023138_151                                            147   9e-37
mtr-MIR2118_MI0010858_Medicago_truncatula_miR2118_stem-loop_159        38   6e-04

>mdm-MIR2118c_MI0023140_103
          Length = 103

 Score =  204 bits (103), Expect = 5e-54
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaggttgaggaagttataggacttagttgctcggtgagaaaacctgatgatctggagtcc 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaggttgaggaagttataggacttagttgctcggtgagaaaacctgatgatctggagtcc 60

                                                      
Query: 75  ttctcctaccgatgccactaagtcccatgatttcctctccctc 117
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttctcctaccgatgccactaagtcccatgatttcctctccctc 103


>mdm-MIR2118b_MI0023139_106
          Length = 106

 Score =  182 bits (92), Expect = 2e-47
 Identities = 103/106 (97%), Gaps = 3/106 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  gaggttgaggaagttataggacttagttgctcggtgagaaaacctgatgatctggagtc- 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1   gaggttgaggaagttataggacttagttgctcggtgagaaaacctgatgatctggagtcc 60

                                                         
Query: 74  --cttctcctaccgatgccactaagtcccatgatttcctctccctc 117
             ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcttctcctaccgatgccactaagtcccatgatttcctctccctc 106


>mdm-MIR2118a_MI0023138_151
          Length = 151

 Score =  147 bits (74), Expect = 9e-37
 Identities = 119/132 (90%), Gaps = 4/132 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggaaaaggagaaagaggttgaggaagttataggacttagttgctcggtgagaaaacct- 59
           |||||| |||||||||| ||||||||||||| ||||||||| ||||||||||||||| | 
Sbjct: 10  gggaaagggagaaagagtttgaggaagttattggacttagtagctcggtgagaaaacatt 69

                                                                       
Query: 60  gatgatctggagtccttc---tcctaccgatgccactaagtcccatgatttcctctccct 116
           || |||||||||| ||||   ||||||||||||||||||||||||||||||||||| |||
Sbjct: 70  gaggatctggagttcttcttctcctaccgatgccactaagtcccatgatttcctctgcct 129

                       
Query: 117 ccttcttttccc 128
           ||| ||||||||
Sbjct: 130 cctccttttccc 141


>mtr-MIR2118_MI0010858_Medicago_truncatula_miR2118_stem-loop_159
          Length = 159

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 1  gggaaaaggagaaagaggttgaggaagttat 31
          |||||| || ||||||| |||||||||||||
Sbjct: 12 gggaaagggtgaaagagcttgaggaagttat 42


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.