(174 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR2118a_MI0023138_151                                            299   1e-82
mdm-MIR2118b_MI0023139_106                                            141   8e-35
mdm-MIR2118c_MI0023140_103                                            113   2e-26
mtr-MIR2118_MI0010858_Medicago_truncatula_miR2118_stem-loop_159        46   3e-06
ghr-MIR482a_MI0013546_Gossypium_hirsutum_miR482a_stem-loop_171         38   9e-04

>mdm-MIR2118a_MI0023138_151
          Length = 151

 Score =  299 bits (151), Expect = 1e-82
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  gagagaagggggaaagggagaaagagtttgaggaagttattggacttagtagctcggtga 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagagaagggggaaagggagaaagagtttgaggaagttattggacttagtagctcggtga 60

                                                                       
Query: 72  gaaaacattgaggatctggagttcttcttctcctaccgatgccactaagtcccatgattt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaaaacattgaggatctggagttcttcttctcctaccgatgccactaagtcccatgattt 120

                                          
Query: 132 cctctgcctcctccttttcccaccttttttc 162
           |||||||||||||||||||||||||||||||
Sbjct: 121 cctctgcctcctccttttcccaccttttttc 151


>mdm-MIR2118b_MI0023139_106
          Length = 106

 Score =  141 bits (71), Expect = 8e-35
 Identities = 96/103 (93%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                       
Query: 39  ttgaggaagttattggacttagtagctcggtgagaaaacattgaggatctggagttcttc 98
           ||||||||||||| ||||||||| ||||||||||||||| | || |||||||||| ||||
Sbjct: 5   ttgaggaagttataggacttagttgctcggtgagaaaacct-gatgatctggagtccttc 63

                                                      
Query: 99  ttctcctaccgatgccactaagtcccatgatttcctctgcctc 141
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64  ttctcctaccgatgccactaagtcccatgatttcctctccctc 106


>mdm-MIR2118c_MI0023140_103
          Length = 103

 Score =  113 bits (57), Expect = 2e-26
 Identities = 93/103 (90%), Gaps = 4/103 (3%)
 Strand = Plus / Plus

                                                                       
Query: 39  ttgaggaagttattggacttagtagctcggtgagaaaacattgaggatctggagttcttc 98
           ||||||||||||| ||||||||| ||||||||||||||| | || |||||||||| ||||
Sbjct: 5   ttgaggaagttataggacttagttgctcggtgagaaaacct-gatgatctggagtccttc 63

                                                      
Query: 99  ttctcctaccgatgccactaagtcccatgatttcctctgcctc 141
              ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 64  ---tcctaccgatgccactaagtcccatgatttcctctccctc 103


>mtr-MIR2118_MI0010858_Medicago_truncatula_miR2118_stem-loop_159
          Length = 159

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 21 gggaaagggagaaagagtttgaggaagttat 51
          ||||||||| ||||||| |||||||||||||
Sbjct: 12 gggaaagggtgaaagagcttgaggaagttat 42


>ghr-MIR482a_MI0013546_Gossypium_hirsutum_miR482a_stem-loop_171
          Length = 171

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 21 gggaaagggagaaagagtt 39
          |||||||||||||||||||
Sbjct: 12 gggaaagggagaaagagtt 30


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.