(116 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR2111b_MI0023119_110                                            218   3e-58
mdm-MIR2111a_MI0023118_95                                             165   3e-42
vvi-MIR2111_MI0015370_Vitis_vinifera_miR2111_stem-loop_108             62   4e-11
mtr-MIR2111r_MI0011846_Medicago_truncatula_miR2111r_stem-loop_134      56   2e-09
mtr-MIR2111b_MI0011904_Medicago_truncatula_miR2111b_stem-loop_166      56   2e-09
mtr-MIR2111l_MI0011840_Medicago_truncatula_miR2111l_stem-loop_199      56   2e-09
tcc-MIR2111_MI0017534_Theobroma_cacao_miR2111_stem-loop_111            56   2e-09
mtr-MIR2111m_MI0011841_Medicago_truncatula_miR2111m_stem-loop_132      56   2e-09
mtr-MIR2111j_MI0011838_Medicago_truncatula_miR2111j_stem-loop_103      56   2e-09
mtr-MIR2111p_MI0011844_Medicago_truncatula_miR2111p_stem-loop_107      56   2e-09
mtr-MIR2111i_MI0011837_Medicago_truncatula_miR2111i_stem-loop_166      56   2e-09
mtr-MIR2111q_MI0011845_Medicago_truncatula_miR2111q_stem-loop_127      56   2e-09
mtr-MIR2111u_MI0018360_Medicago_truncatula_miR2111u_stem-loop_116      56   2e-09
mtr-MIR2111e_MI0011907_Medicago_truncatula_miR2111e_stem-loop_102      54   9e-09
mtr-MIR2111n_MI0011842_Medicago_truncatula_miR2111n_stem-loop_393      54   9e-09
mtr-MIR2111d_MI0011906_Medicago_truncatula_miR2111d_stem-loop_152      52   4e-08
mtr-MIR2111o_MI0011843_Medicago_truncatula_miR2111o_stem-loop_106      52   4e-08
gma-MIR2111_MI0019269_Glycine_max_miR2111_stem-loop_108                52   4e-08
aly-MIR2111a_MI0014630_Arabidopsis_lyrata_miR2111a_stem-loop_141       52   4e-08
mtr-MIR2111k_MI0011839_Medicago_truncatula_miR2111k_stem-loop_106      52   4e-08
mtr-MIR2111f_MI0011908_Medicago_truncatula_miR2111f_stem-loop_134      52   4e-08
mtr-MIR2111s_MI0011847_Medicago_truncatula_miR2111s_stem-loop_107      50   1e-07
ath-MIR2111a_MI0010630_Arabidopsis_thaliana_miR2111a_stem-loop_159     48   6e-07
ath-MIR2111b_MI0010631_Arabidopsis_thaliana_miR2111b_stem-loop_167     48   6e-07
bra-MIR2111a_MI0015372_Brassica_rapa_miR2111a_stem-loop_161            48   6e-07
aly-MIR2111b_MI0014631_Arabidopsis_lyrata_miR2111b_stem-loop_123       48   6e-07
lja-MIR2111_MI0015371_Lotus_japonicus_miR2111_stem-loop_153            48   6e-07
bna-MIR2111a_MI0011288_Brassica_napus_miR2111a_stem-loop_151           48   6e-07
mtr-MIR2111h_MI0011836_Medicago_truncatula_miR2111h_stem-loop_107      46   2e-06
mtr-MIR2111c_MI0011905_Medicago_truncatula_miR2111c_stem-loop_106      46   2e-06
mtr-MIR2111v_MI0019095_Medicago_truncatula_miR2111v_stem-loop_108      46   2e-06
bna-MIR2111b_MI0011287_Brassica_napus_miR2111b_stem-loop_119           46   2e-06
bra-MIR2111b_MI0015373_Brassica_rapa_miR2111b_stem-loop_113            46   2e-06
mtr-MIR2111a_MI0011903_Medicago_truncatula_miR2111a_stem-loop_310      44   9e-06
mtr-MIR2111g_MI0011835_Medicago_truncatula_miR2111g_stem-loop_183      42   3e-05

>mdm-MIR2111b_MI0023119_110
          Length = 110

 Score =  218 bits (110), Expect = 3e-58
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gatattgggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatattgggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtaact 60

                                                             
Query: 65  gttgtatctagtccttgggatgcagattaccttgtcctcaccgccaatgc 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttgtatctagtccttgggatgcagattaccttgtcctcaccgccaatgc 110


>mdm-MIR2111a_MI0023118_95
          Length = 95

 Score =  165 bits (83), Expect = 3e-42
 Identities = 89/91 (97%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtaactgttgtat 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 1   ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtatttgttgtat 60

                                          
Query: 72  ctagtccttgggatgcagattaccttgtcct 102
           |||||||||||||||||||||||||||||||
Sbjct: 61  ctagtccttgggatgcagattaccttgtcct 91


>vvi-MIR2111_MI0015370_Vitis_vinifera_miR2111_stem-loop_108
          Length = 108

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                     
Query: 6  atattgggttaggattgggtaatctgcatcctgaggtttagat 48
          ||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 4  atattgggtcaggatcgggtaatctgcatcctgaggtctagat 46


>mtr-MIR2111r_MI0011846_Medicago_truncatula_miR2111r_stem-loop_134
          Length = 134

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 6  atattgggttaggattgggtaatctgcatcctgaggttta 45
          ||||||||| ||||| || |||||||||||||||||||||
Sbjct: 2  atattgggtgaggatgggataatctgcatcctgaggttta 41


>mtr-MIR2111b_MI0011904_Medicago_truncatula_miR2111b_stem-loop_166
          Length = 166

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 6   atattgggttaggattgggtaatctgcatcctgaggttta 45
           ||||||||| |||||| | |||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160


>mtr-MIR2111l_MI0011840_Medicago_truncatula_miR2111l_stem-loop_199
          Length = 199

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 6   atattgggttaggattgggtaatctgcatcctgaggttta 45
           ||||||||| |||||| | |||||||||||||||||||||
Sbjct: 141 atattgggtaaggattagataatctgcatcctgaggttta 180


>tcc-MIR2111_MI0017534_Theobroma_cacao_miR2111_stem-loop_111
          Length = 111

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 22 gggtaatctgcatcctgaggtttagatc 49
          ||||||||||||||||||||||||||||
Sbjct: 18 gggtaatctgcatcctgaggtttagatc 45


>mtr-MIR2111m_MI0011841_Medicago_truncatula_miR2111m_stem-loop_132
          Length = 132

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 6  atattgggttaggattgggtaatctgcatcctgaggttta 45
          ||||||||| ||||| || |||||||||||||||||||||
Sbjct: 1  atattgggtgaggatgggataatctgcatcctgaggttta 40


>mtr-MIR2111j_MI0011838_Medicago_truncatula_miR2111j_stem-loop_103
          Length = 103

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 6  atattgggttaggattgggtaatctgcatcctgaggttta 45
          ||||||||| |||||| | |||||||||||||||||||||
Sbjct: 1  atattgggtaaggattagataatctgcatcctgaggttta 40


>mtr-MIR2111p_MI0011844_Medicago_truncatula_miR2111p_stem-loop_107
          Length = 107

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 aggattgggtaatctgcatcctgaggtttaga 47
          ||||| ||||||||||||||||||||||||||
Sbjct: 12 aggatagggtaatctgcatcctgaggtttaga 43


>mtr-MIR2111i_MI0011837_Medicago_truncatula_miR2111i_stem-loop_166
          Length = 166

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 6   atattgggttaggattgggtaatctgcatcctgaggttta 45
           ||||||||| |||||| | |||||||||||||||||||||
Sbjct: 121 atattgggtaaggattagataatctgcatcctgaggttta 160


>mtr-MIR2111q_MI0011845_Medicago_truncatula_miR2111q_stem-loop_127
          Length = 127

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 6   atattgggttaggattgggtaatctgcatcctgaggttta 45
           ||||||||| ||||| || |||||||||||||||||||||
Sbjct: 79  atattgggtgaggatgggataatctgcatcctgaggttta 118



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 64 tgttgtatctagtccttgggatgcagattac 94
          |||||||||||||||| ||||| ||||||||
Sbjct: 2  tgttgtatctagtcctcgggatacagattac 32


>mtr-MIR2111u_MI0018360_Medicago_truncatula_miR2111u_stem-loop_116
          Length = 116

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 aggattgggtaatctgcatcctgaggtttaga 47
          ||||| ||||||||||||||||||||||||||
Sbjct: 3  aggatagggtaatctgcatcctgaggtttaga 34


>mtr-MIR2111e_MI0011907_Medicago_truncatula_miR2111e_stem-loop_102
          Length = 102

 Score = 54.0 bits (27), Expect = 9e-09
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 7  tattgggttaggattgggtaatctgcatcctgaggttta 45
          |||||||| |||||| | |||||||||||||||||||||
Sbjct: 2  tattgggtaaggattagataatctgcatcctgaggttta 40


>mtr-MIR2111n_MI0011842_Medicago_truncatula_miR2111n_stem-loop_393
          Length = 393

 Score = 54.0 bits (27), Expect = 9e-09
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 7   tattgggttaggattgggtaatctgcatcctgaggttta 45
           |||||||| |||||| | |||||||||||||||||||||
Sbjct: 336 tattgggtaaggattagataatctgcatcctgaggttta 374


>mtr-MIR2111d_MI0011906_Medicago_truncatula_miR2111d_stem-loop_152
          Length = 152

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 6   atattgggttaggattgggtaatctgcatcctgaggtttaga 47
           |||||| ||| |||| || |||||||||||||||||||||||
Sbjct: 94  atattgagtttggataggataatctgcatcctgaggtttaga 135



 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 66 ttgtatctagtccttgggatgcagattac 94
          |||||||||||||||||||| || |||||
Sbjct: 21 ttgtatctagtccttgggattcaaattac 49


>mtr-MIR2111o_MI0011843_Medicago_truncatula_miR2111o_stem-loop_106
          Length = 106

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 6  atattgggttaggattgggtaatctgcatcctgaggtttaga 47
          |||||| ||| |||| || |||||||||||||||||||||||
Sbjct: 1  atattgagtttggataggataatctgcatcctgaggtttaga 42


>gma-MIR2111_MI0019269_Glycine_max_miR2111_stem-loop_108
          Length = 108

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 17 ggattgggtaatctgcatcctgaggtttag 46
          ||||| ||||||||||||||||||||||||
Sbjct: 13 ggattaggtaatctgcatcctgaggtttag 42



 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 66 ttgtatctagtccttgggatgcagattac 94
          |||| ||||||||||||||||||||||||
Sbjct: 59 ttgtttctagtccttgggatgcagattac 87


>aly-MIR2111a_MI0014630_Arabidopsis_lyrata_miR2111a_stem-loop_141
          Length = 141

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 16 aggattgggtaatctgcatcctgaggttta 45
          ||||| ||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggttta 39


>mtr-MIR2111k_MI0011839_Medicago_truncatula_miR2111k_stem-loop_106
          Length = 106

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 18 gattgggtaatctgcatcctgaggtttaga 47
          |||||| |||||||||||||||||||||||
Sbjct: 13 gattggataatctgcatcctgaggtttaga 42


>mtr-MIR2111f_MI0011908_Medicago_truncatula_miR2111f_stem-loop_134
          Length = 134

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 6  atattgggttaggattgggtaatctgcatcctgaggtttaga 47
          |||||||||  |||| || |||||||||||||||||||||||
Sbjct: 1  atattgggtggggatgggataatctgcatcctgaggtttaga 42


>mtr-MIR2111s_MI0011847_Medicago_truncatula_miR2111s_stem-loop_107
          Length = 107

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 66  ttgtatctagtccttgggatgcagattaccttgtcct 102
           |||||||||||||| ||||||| ||||||||| ||||
Sbjct: 56  ttgtatctagtcctcgggatgctgattaccttttcct 92



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 ggtaatctgcatcctgaggttta 45
          |||||||||||||||||||||||
Sbjct: 19 ggtaatctgcatcctgaggttta 41


>ath-MIR2111a_MI0010630_Arabidopsis_thaliana_miR2111a_stem-
          loop_159
          Length = 159

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gggtaatctgcatcctgaggttta 45
          ||||||||||||||||||||||||
Sbjct: 25 gggtaatctgcatcctgaggttta 48


>ath-MIR2111b_MI0010631_Arabidopsis_thaliana_miR2111b_stem-
          loop_167
          Length = 167

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gggtaatctgcatcctgaggttta 45
          ||||||||||||||||||||||||
Sbjct: 42 gggtaatctgcatcctgaggttta 65


>bra-MIR2111a_MI0015372_Brassica_rapa_miR2111a_stem-loop_161
          Length = 161

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gggtaatctgcatcctgaggttta 45
          ||||||||||||||||||||||||
Sbjct: 26 gggtaatctgcatcctgaggttta 49


>aly-MIR2111b_MI0014631_Arabidopsis_lyrata_miR2111b_stem-loop_123
          Length = 123

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gggtaatctgcatcctgaggttta 45
          ||||||||||||||||||||||||
Sbjct: 17 gggtaatctgcatcctgaggttta 40


>lja-MIR2111_MI0015371_Lotus_japonicus_miR2111_stem-loop_153
          Length = 153

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 14 ttaggattgggtaatctgcatcctgaggttta 45
          |||||||  |||||||||||||||||||||||
Sbjct: 31 ttaggatcaggtaatctgcatcctgaggttta 62



 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 66  ttgtatctagtccttgggatgcagattacc 95
           |||| |||||||||| ||||||||||||||
Sbjct: 77  ttgtgtctagtccttaggatgcagattacc 106


>bna-MIR2111a_MI0011288_Brassica_napus_miR2111a_stem-loop_151
          Length = 151

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 gggtaatctgcatcctgaggttta 45
          ||||||||||||||||||||||||
Sbjct: 24 gggtaatctgcatcctgaggttta 47


>mtr-MIR2111h_MI0011836_Medicago_truncatula_miR2111h_stem-loop_107
          Length = 107

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 25 taatctgcatcctgaggtttaga 47
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>mtr-MIR2111c_MI0011905_Medicago_truncatula_miR2111c_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 25 taatctgcatcctgaggtttaga 47
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>mtr-MIR2111v_MI0019095_Medicago_truncatula_miR2111v_stem-loop_108
          Length = 108

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 25 taatctgcatcctgaggtttaga 47
          |||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43


>bna-MIR2111b_MI0011287_Brassica_napus_miR2111b_stem-loop_119
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 ggtaatctgcatcctgaggttta 45
          |||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggttta 40


>bra-MIR2111b_MI0015373_Brassica_rapa_miR2111b_stem-loop_113
          Length = 113

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 ggtaatctgcatcctgaggttta 45
          |||||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggttta 34


>mtr-MIR2111a_MI0011903_Medicago_truncatula_miR2111a_stem-loop_310
          Length = 310

 Score = 44.1 bits (22), Expect = 9e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 25  taatctgcatcctgaggtttag 46
           ||||||||||||||||||||||
Sbjct: 289 taatctgcatcctgaggtttag 310


>mtr-MIR2111g_MI0011835_Medicago_truncatula_miR2111g_stem-loop_183
          Length = 183

 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 6   atattgggttaggattgggtaatctgcatcctgaggtttag 46
           ||||||||| |||||| | ||| |||||| |||||||||||
Sbjct: 125 atattgggtaaggattagataacctgcattctgaggtttag 165


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.