(94 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR2111a_MI0023118_95                                             186   7e-49
mdm-MIR2111b_MI0023119_110                                            165   3e-42
tcc-MIR2111_MI0017534_Theobroma_cacao_miR2111_stem-loop_111            56   2e-09
mtr-MIR2111p_MI0011844_Medicago_truncatula_miR2111p_stem-loop_107      56   2e-09
mtr-MIR2111u_MI0018360_Medicago_truncatula_miR2111u_stem-loop_116      56   2e-09
mtr-MIR2111s_MI0011847_Medicago_truncatula_miR2111s_stem-loop_107      54   7e-09
gma-MIR2111_MI0019269_Glycine_max_miR2111_stem-loop_108                52   3e-08
aly-MIR2111a_MI0014630_Arabidopsis_lyrata_miR2111a_stem-loop_141       52   3e-08
mtr-MIR2111k_MI0011839_Medicago_truncatula_miR2111k_stem-loop_106      52   3e-08
vvi-MIR2111_MI0015370_Vitis_vinifera_miR2111_stem-loop_108             50   1e-07
ath-MIR2111a_MI0010630_Arabidopsis_thaliana_miR2111a_stem-loop_159     48   4e-07
ath-MIR2111b_MI0010631_Arabidopsis_thaliana_miR2111b_stem-loop_167     48   4e-07
bra-MIR2111a_MI0015372_Brassica_rapa_miR2111a_stem-loop_161            48   4e-07
aly-MIR2111b_MI0014631_Arabidopsis_lyrata_miR2111b_stem-loop_123       48   4e-07
lja-MIR2111_MI0015371_Lotus_japonicus_miR2111_stem-loop_153            48   4e-07
bna-MIR2111a_MI0011288_Brassica_napus_miR2111a_stem-loop_151           48   4e-07
mtr-MIR2111h_MI0011836_Medicago_truncatula_miR2111h_stem-loop_107      46   2e-06
mtr-MIR2111d_MI0011906_Medicago_truncatula_miR2111d_stem-loop_152      46   2e-06
mtr-MIR2111o_MI0011843_Medicago_truncatula_miR2111o_stem-loop_106      46   2e-06
mtr-MIR2111c_MI0011905_Medicago_truncatula_miR2111c_stem-loop_106      46   2e-06
mtr-MIR2111v_MI0019095_Medicago_truncatula_miR2111v_stem-loop_108      46   2e-06
mtr-MIR2111f_MI0011908_Medicago_truncatula_miR2111f_stem-loop_134      46   2e-06
bna-MIR2111b_MI0011287_Brassica_napus_miR2111b_stem-loop_119           46   2e-06
bra-MIR2111b_MI0015373_Brassica_rapa_miR2111b_stem-loop_113            46   2e-06
mtr-MIR2111q_MI0011845_Medicago_truncatula_miR2111q_stem-loop_127      46   2e-06
mtr-MIR2111e_MI0011907_Medicago_truncatula_miR2111e_stem-loop_102      44   7e-06
mtr-MIR2111r_MI0011846_Medicago_truncatula_miR2111r_stem-loop_134      44   7e-06
mtr-MIR2111b_MI0011904_Medicago_truncatula_miR2111b_stem-loop_166      44   7e-06
mtr-MIR2111l_MI0011840_Medicago_truncatula_miR2111l_stem-loop_199      44   7e-06
mtr-MIR2111n_MI0011842_Medicago_truncatula_miR2111n_stem-loop_393      44   7e-06
mtr-MIR2111a_MI0011903_Medicago_truncatula_miR2111a_stem-loop_310      44   7e-06
mtr-MIR2111m_MI0011841_Medicago_truncatula_miR2111m_stem-loop_132      44   7e-06
mtr-MIR2111j_MI0011838_Medicago_truncatula_miR2111j_stem-loop_103      44   7e-06
mtr-MIR2111i_MI0011837_Medicago_truncatula_miR2111i_stem-loop_166      44   7e-06

>mdm-MIR2111a_MI0023118_95
          Length = 95

 Score =  186 bits (94), Expect = 7e-49
 Identities = 94/94 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtatttgttgtat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtatttgttgtat 60

                                            
Query: 61 ctagtccttgggatgcagattaccttgtccttgc 94
          ||||||||||||||||||||||||||||||||||
Sbjct: 61 ctagtccttgggatgcagattaccttgtccttgc 94


>mdm-MIR2111b_MI0023119_110
          Length = 110

 Score =  165 bits (83), Expect = 3e-42
 Identities = 89/91 (97%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtatttgttgtat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 8  ggttaggattgggtaatctgcatcctgaggtttagatcagcacacacgtaactgttgtat 67

                                         
Query: 61 ctagtccttgggatgcagattaccttgtcct 91
          |||||||||||||||||||||||||||||||
Sbjct: 68 ctagtccttgggatgcagattaccttgtcct 98


>tcc-MIR2111_MI0017534_Theobroma_cacao_miR2111_stem-loop_111
          Length = 111

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 11 gggtaatctgcatcctgaggtttagatc 38
          ||||||||||||||||||||||||||||
Sbjct: 18 gggtaatctgcatcctgaggtttagatc 45


>mtr-MIR2111p_MI0011844_Medicago_truncatula_miR2111p_stem-loop_107
          Length = 107

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 5  aggattgggtaatctgcatcctgaggtttaga 36
          ||||| ||||||||||||||||||||||||||
Sbjct: 12 aggatagggtaatctgcatcctgaggtttaga 43


>mtr-MIR2111u_MI0018360_Medicago_truncatula_miR2111u_stem-loop_116
          Length = 116

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 5  aggattgggtaatctgcatcctgaggtttaga 36
          ||||| ||||||||||||||||||||||||||
Sbjct: 3  aggatagggtaatctgcatcctgaggtttaga 34


>mtr-MIR2111s_MI0011847_Medicago_truncatula_miR2111s_stem-loop_107
          Length = 107

 Score = 54.0 bits (27), Expect = 7e-09
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                     
Query: 50 atttgttgtatctagtccttgggatgcagattaccttgtcctt 92
          |||| |||||||||||||| ||||||| ||||||||| |||||
Sbjct: 51 atttattgtatctagtcctcgggatgctgattaccttttcctt 93



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ggtaatctgcatcctgaggttta 34
          |||||||||||||||||||||||
Sbjct: 19 ggtaatctgcatcctgaggttta 41


>gma-MIR2111_MI0019269_Glycine_max_miR2111_stem-loop_108
          Length = 108

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 6  ggattgggtaatctgcatcctgaggtttag 35
          ||||| ||||||||||||||||||||||||
Sbjct: 13 ggattaggtaatctgcatcctgaggtttag 42



 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 55 ttgtatctagtccttgggatgcagattac 83
          |||| ||||||||||||||||||||||||
Sbjct: 59 ttgtttctagtccttgggatgcagattac 87


>aly-MIR2111a_MI0014630_Arabidopsis_lyrata_miR2111a_stem-loop_141
          Length = 141

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 5  aggattgggtaatctgcatcctgaggttta 34
          ||||| ||||||||||||||||||||||||
Sbjct: 10 aggatcgggtaatctgcatcctgaggttta 39


>mtr-MIR2111k_MI0011839_Medicago_truncatula_miR2111k_stem-loop_106
          Length = 106

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 7  gattgggtaatctgcatcctgaggtttaga 36
          |||||| |||||||||||||||||||||||
Sbjct: 13 gattggataatctgcatcctgaggtttaga 42


>vvi-MIR2111_MI0015370_Vitis_vinifera_miR2111_stem-loop_108
          Length = 108

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 5  aggattgggtaatctgcatcctgaggtttagat 37
          ||||| ||||||||||||||||||||| |||||
Sbjct: 14 aggatcgggtaatctgcatcctgaggtctagat 46


>ath-MIR2111a_MI0010630_Arabidopsis_thaliana_miR2111a_stem-
          loop_159
          Length = 159

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 gggtaatctgcatcctgaggttta 34
          ||||||||||||||||||||||||
Sbjct: 25 gggtaatctgcatcctgaggttta 48


>ath-MIR2111b_MI0010631_Arabidopsis_thaliana_miR2111b_stem-
          loop_167
          Length = 167

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 gggtaatctgcatcctgaggttta 34
          ||||||||||||||||||||||||
Sbjct: 42 gggtaatctgcatcctgaggttta 65


>bra-MIR2111a_MI0015372_Brassica_rapa_miR2111a_stem-loop_161
          Length = 161

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 gggtaatctgcatcctgaggttta 34
          ||||||||||||||||||||||||
Sbjct: 26 gggtaatctgcatcctgaggttta 49


>aly-MIR2111b_MI0014631_Arabidopsis_lyrata_miR2111b_stem-loop_123
          Length = 123

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 gggtaatctgcatcctgaggttta 34
          ||||||||||||||||||||||||
Sbjct: 17 gggtaatctgcatcctgaggttta 40


>lja-MIR2111_MI0015371_Lotus_japonicus_miR2111_stem-loop_153
          Length = 153

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 3  ttaggattgggtaatctgcatcctgaggttta 34
          |||||||  |||||||||||||||||||||||
Sbjct: 31 ttaggatcaggtaatctgcatcctgaggttta 62



 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 55  ttgtatctagtccttgggatgcagattacc 84
           |||| |||||||||| ||||||||||||||
Sbjct: 77  ttgtgtctagtccttaggatgcagattacc 106


>bna-MIR2111a_MI0011288_Brassica_napus_miR2111a_stem-loop_151
          Length = 151

 Score = 48.1 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 gggtaatctgcatcctgaggttta 34
          ||||||||||||||||||||||||
Sbjct: 24 gggtaatctgcatcctgaggttta 47


>mtr-MIR2111h_MI0011836_Medicago_truncatula_miR2111h_stem-loop_107
          Length = 107

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 taatctgcatcctgaggtttaga 36
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>mtr-MIR2111d_MI0011906_Medicago_truncatula_miR2111d_stem-loop_152
          Length = 152

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 14  taatctgcatcctgaggtttaga 36
           |||||||||||||||||||||||
Sbjct: 113 taatctgcatcctgaggtttaga 135



 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 55 ttgtatctagtccttgggatgcagattaccttgtcctt 92
          |||||||||||||||||||| || ||||| || |||||
Sbjct: 21 ttgtatctagtccttgggattcaaattacattttcctt 58


>mtr-MIR2111o_MI0011843_Medicago_truncatula_miR2111o_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 taatctgcatcctgaggtttaga 36
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>mtr-MIR2111c_MI0011905_Medicago_truncatula_miR2111c_stem-loop_106
          Length = 106

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 taatctgcatcctgaggtttaga 36
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>mtr-MIR2111v_MI0019095_Medicago_truncatula_miR2111v_stem-loop_108
          Length = 108

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 taatctgcatcctgaggtttaga 36
          |||||||||||||||||||||||
Sbjct: 21 taatctgcatcctgaggtttaga 43


>mtr-MIR2111f_MI0011908_Medicago_truncatula_miR2111f_stem-loop_134
          Length = 134

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 taatctgcatcctgaggtttaga 36
          |||||||||||||||||||||||
Sbjct: 20 taatctgcatcctgaggtttaga 42


>bna-MIR2111b_MI0011287_Brassica_napus_miR2111b_stem-loop_119
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ggtaatctgcatcctgaggttta 34
          |||||||||||||||||||||||
Sbjct: 18 ggtaatctgcatcctgaggttta 40


>bra-MIR2111b_MI0015373_Brassica_rapa_miR2111b_stem-loop_113
          Length = 113

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ggtaatctgcatcctgaggttta 34
          |||||||||||||||||||||||
Sbjct: 12 ggtaatctgcatcctgaggttta 34


>mtr-MIR2111q_MI0011845_Medicago_truncatula_miR2111q_stem-loop_127
          Length = 127

 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 53 tgttgtatctagtccttgggatgcagattac 83
          |||||||||||||||| ||||| ||||||||
Sbjct: 2  tgttgtatctagtcctcgggatacagattac 32



 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 5   aggattgggtaatctgcatcctgaggttta 34
           ||||| || |||||||||||||||||||||
Sbjct: 89  aggatgggataatctgcatcctgaggttta 118


>mtr-MIR2111e_MI0011907_Medicago_truncatula_miR2111e_stem-loop_102
          Length = 102

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 5  aggattgggtaatctgcatcctgaggttta 34
          |||||| | |||||||||||||||||||||
Sbjct: 11 aggattagataatctgcatcctgaggttta 40


>mtr-MIR2111r_MI0011846_Medicago_truncatula_miR2111r_stem-loop_134
          Length = 134

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 5  aggattgggtaatctgcatcctgaggttta 34
          ||||| || |||||||||||||||||||||
Sbjct: 12 aggatgggataatctgcatcctgaggttta 41


>mtr-MIR2111b_MI0011904_Medicago_truncatula_miR2111b_stem-loop_166
          Length = 166

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 5   aggattgggtaatctgcatcctgaggttta 34
           |||||| | |||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggttta 160


>mtr-MIR2111l_MI0011840_Medicago_truncatula_miR2111l_stem-loop_199
          Length = 199

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 5   aggattgggtaatctgcatcctgaggttta 34
           |||||| | |||||||||||||||||||||
Sbjct: 151 aggattagataatctgcatcctgaggttta 180


>mtr-MIR2111n_MI0011842_Medicago_truncatula_miR2111n_stem-loop_393
          Length = 393

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 5   aggattgggtaatctgcatcctgaggttta 34
           |||||| | |||||||||||||||||||||
Sbjct: 345 aggattagataatctgcatcctgaggttta 374


>mtr-MIR2111a_MI0011903_Medicago_truncatula_miR2111a_stem-loop_310
          Length = 310

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 14  taatctgcatcctgaggtttag 35
           ||||||||||||||||||||||
Sbjct: 289 taatctgcatcctgaggtttag 310


>mtr-MIR2111m_MI0011841_Medicago_truncatula_miR2111m_stem-loop_132
          Length = 132

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 5  aggattgggtaatctgcatcctgaggttta 34
          ||||| || |||||||||||||||||||||
Sbjct: 11 aggatgggataatctgcatcctgaggttta 40


>mtr-MIR2111j_MI0011838_Medicago_truncatula_miR2111j_stem-loop_103
          Length = 103

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 5  aggattgggtaatctgcatcctgaggttta 34
          |||||| | |||||||||||||||||||||
Sbjct: 11 aggattagataatctgcatcctgaggttta 40


>mtr-MIR2111i_MI0011837_Medicago_truncatula_miR2111i_stem-loop_166
          Length = 166

 Score = 44.1 bits (22), Expect = 7e-06
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 5   aggattgggtaatctgcatcctgaggttta 34
           |||||| | |||||||||||||||||||||
Sbjct: 131 aggattagataatctgcatcctgaggttta 160


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.