(257 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ptc-MIR530b_MI0007036_Populus_trichocarpa_miR530b_stem-loop_172        60   4e-10
ptc-MIR530a_MI0007035_Populus_trichocarpa_miR530a_stem-loop_144        58   1e-09
gma-MIR530_MI0017852_Glycine_max_miR530_stem-loop_150                  52   9e-08
gma-MIR530b_MI0019275_Glycine_max_miR530b_stem-loop_151                46   5e-06
tcc-MIR530b_MI0017531_Theobroma_cacao_miR530b_stem-loop_178            46   5e-06
tcc-MIR530a_MI0017530_Theobroma_cacao_miR530a_stem-loop_163            46   5e-06
csi-MIR530b_MI0016725_Citrus_sinensis_miR530b_stem-loop_154            44   2e-05

>ptc-MIR530b_MI0007036_Populus_trichocarpa_miR530b_stem-loop_172
          Length = 172

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 212 tgcaggtgccagtgcaggtgaatgccattttggt 245
           ||||||||| ||||||||||||||||||||||||
Sbjct: 139 tgcaggtgcaagtgcaggtgaatgccattttggt 172



 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 12 gccaaaatgttgcttttatctgcatttgcacctgca 47
          ||||| ||||||| ||||||||||||||||||||||
Sbjct: 1  gccaatatgttgcctttatctgcatttgcacctgca 36


>ptc-MIR530a_MI0007035_Populus_trichocarpa_miR530a_stem-loop_144
          Length = 144

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 12 gccaaaatgttgcttttatctgcatttgcacctgcac 48
          ||||| ||||||| |||||||||||||||||||||||
Sbjct: 1  gccaacatgttgcctttatctgcatttgcacctgcac 37



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 212 tgcaggtgccagtgcaggtgaatgccattttggt 245
           |||||||||  ||||||||||||||||| |||||
Sbjct: 111 tgcaggtgcaggtgcaggtgaatgccatgttggt 144


>gma-MIR530_MI0017852_Glycine_max_miR530_stem-loop_150
          Length = 150

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 21 ttgcttttatctgcatttgcacctgcactt 50
          |||| |||||||||||||||||||||||||
Sbjct: 1  ttgcctttatctgcatttgcacctgcactt 30


>gma-MIR530b_MI0019275_Glycine_max_miR530b_stem-loop_151
          Length = 151

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 28 tatctgcatttgcacctgcactt 50
          |||||||||||||||||||||||
Sbjct: 7  tatctgcatttgcacctgcactt 29


>tcc-MIR530b_MI0017531_Theobroma_cacao_miR530b_stem-loop_178
          Length = 178

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 tttatctgcatttgcacctgcac 48
          |||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcac 37



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 tgcaggtgaatgccattttgg 244
           |||||||||||||||||||||
Sbjct: 153 tgcaggtgaatgccattttgg 173


>tcc-MIR530a_MI0017530_Theobroma_cacao_miR530a_stem-loop_163
          Length = 163

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 26 tttatctgcatttgcacctgcac 48
          |||||||||||||||||||||||
Sbjct: 15 tttatctgcatttgcacctgcac 37


>csi-MIR530b_MI0016725_Citrus_sinensis_miR530b_stem-loop_154
          Length = 154

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 26 tttatctgcatttgcacctgca 47
          ||||||||||||||||||||||
Sbjct: 5  tttatctgcatttgcacctgca 26


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.