(234 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ptc-MIR159b_MI0002196_Populus_trichocarpa_miR159b_stem-loop_187        86   6e-18
csi-MIR159_MI0016693_Citrus_sinensis_miR159_stem-loop_216              80   3e-16
rco-MIR159_MI0013378_Ricinus_communis_miR159_stem-loop_180             78   1e-15
vvi-MIR159c_MI0006495_Vitis_vinifera_miR159c_stem-loop_190             76   5e-15
gma-MIR159e_MI0018657_Glycine_max_miR159e_stem-loop_211                74   2e-14
ahy-MIR159_MI0015335_Arachis_hypogaea_miR159_stem-loop_197             72   8e-14
ptc-MIR159c_MI0002197_Populus_trichocarpa_miR159c_stem-loop_183        64   2e-11
ptc-MIR159a_MI0002195_Populus_trichocarpa_miR159a_stem-loop_183        64   2e-11
pvu-MIR159a_MI0010700_Phaseolus_vulgaris_miR159a_stem-loop_174         62   8e-11
gma-MIR159a_MI0001773_Glycine_max_miR159a_stem-loop_214                56   5e-09
osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188               56   5e-09
aly-MIR159a_MI0014515_Arabidopsis_lyrata_miR159a_stem-loop_222         44   2e-05
bra-MIR159a_MI0010649_Brassica_rapa_miR159a_stem-loop_185              40   3e-04
osa-MIR159c_MI0001094_Oryza_sativa_miR159c_stem-loop_197               40   3e-04
tae-MIR159b_MI0006171_Triticum_aestivum_miR159b_stem-loop_255          40   3e-04
gma-MIR159d_MI0016581_Glycine_max_miR159d_stem-loop_103                40   3e-04
osa-MIR159a_MI0001092_Oryza_sativa_miR159a_stem-loop_272               40   3e-04
sly-MIR159_MI0009974_Solanum_lycopersicum_miR159_stem-loop_177         40   3e-04
mtr-MIR159a_MI0010696_Medicago_truncatula_miR159a_stem-loop_183        40   3e-04
bna-MIR159_MI0006480_Brassica_napus_miR159_stem-loop_183               40   3e-04

>ptc-MIR159b_MI0002196_Populus_trichocarpa_miR159b_stem-loop_187
          Length = 187

 Score = 85.7 bits (43), Expect = 6e-18
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                      
Query: 17 ggagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagct 76
          |||||||||||||||||||||||| ||||| |  |||||||| ||| |||||||||||||
Sbjct: 7  ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 66

                             
Query: 77 atggatcccagagtcctat 95
          ||| |||||| || |||||
Sbjct: 67 atgaatcccacagccctat 85



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 149 ggcttgcatatctcaggagctgcattacct 178
           |||||||||||||||||||||  |||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacct 142


>csi-MIR159_MI0016693_Citrus_sinensis_miR159_stem-loop_216
          Length = 216

 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 80/92 (86%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  gggttaaggagtggagctccttgaagtccaaaagaaggtgatgc-tgggtggatagagct 68
           ||||||||||||||||||||||||||||||||||| | |   ||  ||||  || |||||
Sbjct: 1   gggttaaggagtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagct 60

                                           
Query: 69  gctgagctatggatcccagagtcctatatatc 100
           |||||||||||||||||| |||||||| ||||
Sbjct: 61  gctgagctatggatcccacagtcctatgtatc 92



 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 135 gatgataggcttgtggcttgcatatctcaggagctgcattacc 177
           ||||||||||||||||||||||||| || ||| || |||||||
Sbjct: 122 gatgataggcttgtggcttgcatatttctggaccttcattacc 164


>rco-MIR159_MI0013378_Ricinus_communis_miR159_stem-loop_180
          Length = 180

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                      
Query: 18 gagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagcta 77
          ||||||||||||||||||||||| ||| | |  || ||||| ||| ||||||||||||||
Sbjct: 1  gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 60

                             
Query: 78 tggatcccagagtcctata 96
          ||||||||| || ||||||
Sbjct: 61 tggatcccacagccctata 79



 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                    
Query: 138 gataggcttgtggcttgcatatctcaggagctgcattacct 178
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 99  gataggcttgtggcttgcatatctcaggagcttcattacct 139


>vvi-MIR159c_MI0006495_Vitis_vinifera_miR159c_stem-loop_190
          Length = 190

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 138 gataggcttgtggcttgcatatctcaggagctgcatta 175
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gataggcttgtggcttgcatatctcaggagctgcatta 141



 Score = 69.9 bits (35), Expect = 3e-13
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                      
Query: 17 ggagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagct 76
          |||||||||||||||||||||||| ||| |||  | |||||| ||| ||||||||||  |
Sbjct: 5  ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 64

                             
Query: 77 atggatcccagagtcctat 95
          |||||||||| || |||||
Sbjct: 65 atggatcccacagccctat 83



 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 198 ggattgaagggagctctacacctctctc 225
           ||||||||||||||||||||||||||||
Sbjct: 163 ggattgaagggagctctacacctctctc 190


>gma-MIR159e_MI0018657_Glycine_max_miR159e_stem-loop_211
          Length = 211

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                      
Query: 10 gggttaaggagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctg 69
          |||||| ||||||||||||||||||||||||  || | |  | |||||||||| ||||||
Sbjct: 7  gggttatggagtggagctccttgaagtccaattgaggatcttactgggtggattgagctg 66

                           
Query: 70 ctgagctatggatccca 86
          || ||||||||||||||
Sbjct: 67 cttagctatggatccca 83



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 198 ggattgaagggagctctacacc 219
           ||||||||||||||||||||||
Sbjct: 175 ggattgaagggagctctacacc 196


>ahy-MIR159_MI0015335_Arachis_hypogaea_miR159_stem-loop_197
          Length = 197

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                      
Query: 19 agtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagctat 78
          |||||||||||||||||||||| ||| |||  || ||||| ||| |||||||| ||||||
Sbjct: 1  agtggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctat 60

                  
Query: 79 ggatccca 86
          ||||||||
Sbjct: 61 ggatccca 68



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggattgaagggagctctaca 217
           ||||||||||||||||||||
Sbjct: 160 ggattgaagggagctctaca 179


>ptc-MIR159c_MI0002197_Populus_trichocarpa_miR159c_stem-loop_183
          Length = 183

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                      
Query: 17 ggagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagct 76
          |||||||||||||||||||||||| ||| | |  |||||||| |||  ||||||| ||||
Sbjct: 7  ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66

                  
Query: 77 atggatcc 84
          ||||||||
Sbjct: 67 atggatcc 74



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 138 gataggcttgtggcttgcatatctcaggagct 169
           |||||| ||| |||||||||||||||||||||
Sbjct: 98  gataggtttgcggcttgcatatctcaggagct 129


>ptc-MIR159a_MI0002195_Populus_trichocarpa_miR159a_stem-loop_183
          Length = 183

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                      
Query: 17 ggagtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagct 76
          |||||||||||||||||||||||| ||| | |  |||||||| |||  ||||||| ||||
Sbjct: 7  ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66

                  
Query: 77 atggatcc 84
          ||||||||
Sbjct: 67 atggatcc 74



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 138 gataggcttgtggcttgcatatctcaggagct 169
           |||||| ||| |||||||||||||||||||||
Sbjct: 98  gataggtttgcggcttgcatatctcaggagct 129


>pvu-MIR159a_MI0010700_Phaseolus_vulgaris_miR159a_stem-loop_174
          Length = 174

 Score = 61.9 bits (31), Expect = 8e-11
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                      
Query: 20 gtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagctatg 79
          |||||||||||||||||||||  || | |  | |||||||||| |||||||| |||||||
Sbjct: 1  gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60

                 
Query: 80 gatccca 86
          |||||||
Sbjct: 61 gatccca 67


>gma-MIR159a_MI0001773_Glycine_max_miR159a_stem-loop_214
          Length = 214

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                      
Query: 19 agtggagctccttgaagtccaaaagaaggtgatgctgggtggatagagctgctgagctat 78
          ||||||||||||||||||||||  || | |  | ||||||| || |||||||| ||||||
Sbjct: 19 agtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctat 78

                  
Query: 79 ggatccca 86
          ||||||||
Sbjct: 79 ggatccca 86



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 198 ggattgaagggagctctacacc 219
           ||||||||||||||||||||||
Sbjct: 178 ggattgaagggagctctacacc 199


>osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188
          Length = 188

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 198 ggattgaagggagctctacacctctctc 225
           ||||||||||||||||||||||||||||
Sbjct: 161 ggattgaagggagctctacacctctctc 188


>aly-MIR159a_MI0014515_Arabidopsis_lyrata_miR159a_stem-loop_222
          Length = 222

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 148 tggcttgcatatctcaggagct 169
           ||||||||||||||||||||||
Sbjct: 130 tggcttgcatatctcaggagct 151



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggattgaagggagctctaca 217
           ||||||||||||||||||||
Sbjct: 186 ggattgaagggagctctaca 205


>bra-MIR159a_MI0010649_Brassica_rapa_miR159a_stem-loop_185
          Length = 185

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggattgaagggagctctaca 217
           ||||||||||||||||||||
Sbjct: 166 ggattgaagggagctctaca 185


>osa-MIR159c_MI0001094_Oryza_sativa_miR159c_stem-loop_197
          Length = 197

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 198 ggattgaagggagctctacacctctctc 225
           |||||||||||||||| ||| |||||||
Sbjct: 170 ggattgaagggagctccacatctctctc 197


>tae-MIR159b_MI0006171_Triticum_aestivum_miR159b_stem-loop_255
          Length = 255

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 138 gataggcttgtggcttgcatatctcaggagctgcat 173
           ||||||||| ||||||||||  | ||||||||||||
Sbjct: 175 gataggcttatggcttgcatgccccaggagctgcat 210


>gma-MIR159d_MI0016581_Glycine_max_miR159d_stem-loop_103
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 55 gggtggatagagctgctgagctatggatccca 86
          ||||| || |||||||| ||||||||||||||
Sbjct: 1  gggtgaattgagctgcttagctatggatccca 32


>osa-MIR159a_MI0001092_Oryza_sativa_miR159a_stem-loop_272
          Length = 272

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 138 gataggcttgtggcttgcatatctcaggagctgcat 173
           ||||||||| ||||||||||  | ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222


>sly-MIR159_MI0009974_Solanum_lycopersicum_miR159_stem-loop_177
          Length = 177

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 21 tggagctccttgaagtccaa 40
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20


>mtr-MIR159a_MI0010696_Medicago_truncatula_miR159a_stem-loop_183
          Length = 183

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggattgaagggagctctaca 217
           ||||||||||||||||||||
Sbjct: 155 ggattgaagggagctctaca 174


>bna-MIR159_MI0006480_Brassica_napus_miR159_stem-loop_183
          Length = 183

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ggattgaagggagctctaca 217
           ||||||||||||||||||||
Sbjct: 164 ggattgaagggagctctaca 183


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.