(211 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ahy-MIR159_MI0015335_Arachis_hypogaea_miR159_stem-loop_197             76   5e-15
ptc-MIR159b_MI0002196_Populus_trichocarpa_miR159b_stem-loop_187        74   2e-14
vvi-MIR159c_MI0006495_Vitis_vinifera_miR159c_stem-loop_190             68   1e-12
rco-MIR159_MI0013378_Ricinus_communis_miR159_stem-loop_180             66   5e-12
gma-MIR159e_MI0018657_Glycine_max_miR159e_stem-loop_211                64   2e-11
csi-MIR159_MI0016693_Citrus_sinensis_miR159_stem-loop_216              64   2e-11
pvu-MIR159a_MI0010700_Phaseolus_vulgaris_miR159a_stem-loop_174         60   3e-10
gma-MIR159a_MI0001773_Glycine_max_miR159a_stem-loop_214                52   7e-08
osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188               52   7e-08
ptc-MIR159c_MI0002197_Populus_trichocarpa_miR159c_stem-loop_183        48   1e-06
ptc-MIR159a_MI0002195_Populus_trichocarpa_miR159a_stem-loop_183        48   1e-06
aly-MIR159a_MI0014515_Arabidopsis_lyrata_miR159a_stem-loop_222         44   2e-05
bra-MIR159a_MI0010649_Brassica_rapa_miR159a_stem-loop_185              40   3e-04
gma-MIR159d_MI0016581_Glycine_max_miR159d_stem-loop_103                40   3e-04
sly-MIR159_MI0009974_Solanum_lycopersicum_miR159_stem-loop_177         40   3e-04
mtr-MIR159a_MI0010696_Medicago_truncatula_miR159a_stem-loop_183        40   3e-04
bna-MIR159_MI0006480_Brassica_napus_miR159_stem-loop_183               40   3e-04

>ahy-MIR159_MI0015335_Arachis_hypogaea_miR159_stem-loop_197
          Length = 197

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||| |||  || ||||| ||| |||||| | ||||||||
Sbjct: 3  tggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctatgg 62

                        
Query: 71 atcccacagtacta 84
          ||||||||||||||
Sbjct: 63 atcccacagtacta 76



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 160 ggattgaagggagctctaca 179


>ptc-MIR159b_MI0002196_Populus_trichocarpa_miR159b_stem-loop_187
          Length = 187

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||||| |  |||||||| ||| |||||| ||||||||| 
Sbjct: 11 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 70

                   
Query: 71 atcccacag 79
          |||||||||
Sbjct: 71 atcccacag 79



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 136 ggcttgcatatctcaggagctgcattacct 165
           |||||||||||||||||||||  |||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacct 142


>vvi-MIR159c_MI0006495_Vitis_vinifera_miR159c_stem-loop_190
          Length = 190

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 125 gatagggttgtggcttgcatatctcaggagctgcatta 162
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 104 gataggcttgtggcttgcatatctcaggagctgcatta 141



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||| |||  | |||||| ||| |||||| |||  |||||
Sbjct: 9  tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 68

                   
Query: 71 atcccacag 79
          |||||||||
Sbjct: 69 atcccacag 77



 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 185 ggattgaagggagctctacacctctc 210
           ||||||||||||||||||||||||||
Sbjct: 163 ggattgaagggagctctacacctctc 188


>rco-MIR159_MI0013378_Ricinus_communis_miR159_stem-loop_180
          Length = 180

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||| | |  || ||||| ||| |||||| ||||||||||
Sbjct: 4  tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 63

                   
Query: 71 atcccacag 79
          |||||||||
Sbjct: 64 atcccacag 72



 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 125 gatagggttgtggcttgcatatctcaggagctgcattacct 165
           |||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 99  gataggcttgtggcttgcatatctcaggagcttcattacct 139



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 158 ggattgaagggagctctaca 177


>gma-MIR159e_MI0018657_Glycine_max_miR159e_stem-loop_211
          Length = 211

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggttaaggattggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgt 60
          ||||| ||| ||||||||||||||||||||  || | |  | |||||||||| |||||| 
Sbjct: 8  ggttatggagtggagctccttgaagtccaattgaggatcttactgggtggattgagctgc 67

                              
Query: 61 tgagctatggatcccacagt 80
          | ||||||||||||||||||
Sbjct: 68 ttagctatggatcccacagt 87



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 185 ggattgaagggagctctacacc 206
           ||||||||||||||||||||||
Sbjct: 175 ggattgaagggagctctacacc 196


>csi-MIR159_MI0016693_Citrus_sinensis_miR159_stem-loop_216
          Length = 216

 Score = 63.9 bits (32), Expect = 2e-11
 Identities = 80/92 (86%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggttaaggattggagctccttgaagtccaaaagaaggttat-gc-tgggtggatagagct 58
          ||||||||| ||||||||||||||||||||||| ||||| | ||  ||||  || |||||
Sbjct: 2  ggttaaggagtggagctccttgaagtccaaaag-aggttctagcaagggtaaattgagct 60

                                          
Query: 59 gttgagctatggatcccacagtactatttatc 90
          | |||||||||||||||||||| |||| ||||
Sbjct: 61 gctgagctatggatcccacagtcctatgtatc 92



 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 122 gatgatagggttgtggcttgcatatctcaggagctgcattacc 164
           ||||||||| ||||||||||||||| || ||| || |||||||
Sbjct: 122 gatgataggcttgtggcttgcatatttctggaccttcattacc 164


>pvu-MIR159a_MI0010700_Phaseolus_vulgaris_miR159a_stem-loop_174
          Length = 174

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          ||||||||||||||||||||  || | |  | |||||||||| |||||| | ||||||||
Sbjct: 2  tggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatgg 61

                    
Query: 71 atcccacagt 80
          ||||||||||
Sbjct: 62 atcccacagt 71


>gma-MIR159a_MI0001773_Glycine_max_miR159a_stem-loop_214
          Length = 214

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          ||||||||||||||||||||  || | |  | ||||||| || |||||| | ||||||||
Sbjct: 21 tggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatgg 80

                    
Query: 71 atcccacagt 80
          ||||||||||
Sbjct: 81 atcccacagt 90



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 185 ggattgaagggagctctacacc 206
           ||||||||||||||||||||||
Sbjct: 178 ggattgaagggagctctacacc 199


>osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188
          Length = 188

 Score = 52.0 bits (26), Expect = 7e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 185 ggattgaagggagctctacacctctc 210
           ||||||||||||||||||||||||||
Sbjct: 161 ggattgaagggagctctacacctctc 186


>ptc-MIR159c_MI0002197_Populus_trichocarpa_miR159c_stem-loop_183
          Length = 183

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||| | |  |||||||| |||  ||||| | ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70

              
Query: 71 atcc 74
          ||||
Sbjct: 71 atcc 74



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 125 gatagggttgtggcttgcatatctcaggagct 156
           |||||| ||| |||||||||||||||||||||
Sbjct: 98  gataggtttgcggcttgcatatctcaggagct 129


>ptc-MIR159a_MI0002195_Populus_trichocarpa_miR159a_stem-loop_183
          Length = 183

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                      
Query: 11 tggagctccttgaagtccaaaagaaggttatgctgggtggatagagctgttgagctatgg 70
          |||||||||||||||||||| ||| | |  |||||||| |||  ||||| | ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70

              
Query: 71 atcc 74
          ||||
Sbjct: 71 atcc 74



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 125 gatagggttgtggcttgcatatctcaggagct 156
           |||||| ||| |||||||||||||||||||||
Sbjct: 98  gataggtttgcggcttgcatatctcaggagct 129


>aly-MIR159a_MI0014515_Arabidopsis_lyrata_miR159a_stem-loop_222
          Length = 222

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 135 tggcttgcatatctcaggagct 156
           ||||||||||||||||||||||
Sbjct: 130 tggcttgcatatctcaggagct 151



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 186 ggattgaagggagctctaca 205


>bra-MIR159a_MI0010649_Brassica_rapa_miR159a_stem-loop_185
          Length = 185

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 166 ggattgaagggagctctaca 185


>gma-MIR159d_MI0016581_Glycine_max_miR159d_stem-loop_103
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 45 gggtggatagagctgttgagctatggatcccacagt 80
          ||||| || |||||| | ||||||||||||||||||
Sbjct: 1  gggtgaattgagctgcttagctatggatcccacagt 36


>sly-MIR159_MI0009974_Solanum_lycopersicum_miR159_stem-loop_177
          Length = 177

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 11 tggagctccttgaagtccaa 30
          ||||||||||||||||||||
Sbjct: 1  tggagctccttgaagtccaa 20


>mtr-MIR159a_MI0010696_Medicago_truncatula_miR159a_stem-loop_183
          Length = 183

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 155 ggattgaagggagctctaca 174


>bna-MIR159_MI0006480_Brassica_napus_miR159_stem-loop_183
          Length = 183

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ggattgaagggagctctaca 204
           ||||||||||||||||||||
Sbjct: 164 ggattgaagggagctctaca 183


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.