(152 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR828a_MI0023133_142                                             145   4e-36
mdm-MIR828b_MI0023134_158                                             105   4e-24
aly-MIR828_MI0014606_Arabidopsis_lyrata_miR828_stem-loop_199           52   5e-08
ath-MIR828_MI0005384_Arabidopsis_thaliana_miR828_stem-loop_191         52   5e-08
vvi-MIR828a_MI0007972_Vitis_vinifera_miR828a_stem-loop_122             50   2e-07
ssl-MIR828_MI0019355_Salvia_sclarea_miR828_stem-loop_126               44   1e-05
vvi-MIR828b_MI0007973_Vitis_vinifera_miR828b_stem-loop_72              42   5e-05

>mdm-MIR828a_MI0023133_142
          Length = 142

 Score =  145 bits (73), Expect = 4e-36
 Identities = 119/142 (83%)
 Strand = Plus / Plus

                                                                       
Query: 6   tcctctttgtaatgtttcttgctcaaatgagtattccagccacagtttgcctgcagcttg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcctctttgtaatgtttcttgctcaaatgagtattccagccacagtttgcctgcagcttg 60

                                                                       
Query: 66  cnnnnnnnnnnnnnnnnnnnnnnngcgctggtgcttctgcaattctgagatgctcatttg 125
           |                       ||||||||||||||||||||||||||||||||||||
Sbjct: 61  catatatatatatatatatatatagcgctggtgcttctgcaattctgagatgctcatttg 120

                                 
Query: 126 agcaagcagcgttacaagagga 147
           ||||||||||||||||||||||
Sbjct: 121 agcaagcagcgttacaagagga 142


>mdm-MIR828b_MI0023134_158
          Length = 158

 Score =  105 bits (53), Expect = 4e-24
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                      
Query: 6  tcctctttgtaatgtttcttgctcaaatgagtattccagccacagtttgcctgcagcttg 65
          ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1  tcctcttcgtaatgtttcttgctcaaatgagtattccagccacagtttgcatgcagcttg 60

           
Query: 66 c 66
          |
Sbjct: 61 c 61



 Score = 85.7 bits (43), Expect = 3e-18
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                  
Query: 93  ctggtgcttctgcaattctgagatgctcatttgagcaagcagcgttacaagagga 147
           |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct: 104 ctggtgcttctgcaatcctgagatgctcatttgggcaagcaacgttacaagagga 158


>aly-MIR828_MI0014606_Arabidopsis_lyrata_miR828_stem-loop_199
          Length = 199

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 ctttgtaatgtttcttgctcaaatgagtattcca 43
          |||| |||||||||||||| ||||||||||||||
Sbjct: 39 ctttctaatgtttcttgcttaaatgagtattcca 72



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 111 tgagatgctcatttgagcaagca 133
           |||||||||||||||||||||||
Sbjct: 127 tgagatgctcatttgagcaagca 149


>ath-MIR828_MI0005384_Arabidopsis_thaliana_miR828_stem-loop_191
          Length = 191

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 ctttgtaatgtttcttgctcaaatgagtattcca 43
          |||| |||||||||||||| ||||||||||||||
Sbjct: 38 ctttctaatgtttcttgcttaaatgagtattcca 71



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 111 tgagatgctcatttgagcaagca 133
           |||||||||||||||||||||||
Sbjct: 121 tgagatgctcatttgagcaagca 143


>vvi-MIR828a_MI0007972_Vitis_vinifera_miR828a_stem-loop_122
          Length = 122

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 gtttcttgctcaaatgagtattcca 43
          |||||||||||||||||||||||||
Sbjct: 7  gtttcttgctcaaatgagtattcca 31



 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 tgagatgctcatttgagcaagca 133
           ||||||||||||||||| |||||
Sbjct: 88  tgagatgctcatttgaggaagca 110


>ssl-MIR828_MI0019355_Salvia_sclarea_miR828_stem-loop_126
          Length = 126

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tcttgctcaaatgagtattcca 43
          ||||||||||||||||||||||
Sbjct: 1  tcttgctcaaatgagtattcca 22



 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 108 ttctgagatgctcatttgagcaa 130
           |||||||||||||||||| ||||
Sbjct: 102 ttctgagatgctcatttgggcaa 124


>vvi-MIR828b_MI0007973_Vitis_vinifera_miR828b_stem-loop_72
          Length = 72

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 19 gtttcttgctcaaatgagtattcca 43
          ||||||||||||||||||| |||||
Sbjct: 8  gtttcttgctcaaatgagtgttcca 32


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.