(148 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR828b_MI0023134_158                                             111   6e-26
mdm-MIR828a_MI0023133_142                                              98   9e-22
aly-MIR828_MI0014606_Arabidopsis_lyrata_miR828_stem-loop_199           50   2e-07
vvi-MIR828a_MI0007972_Vitis_vinifera_miR828a_stem-loop_122             50   2e-07
ath-MIR828_MI0005384_Arabidopsis_thaliana_miR828_stem-loop_191         50   2e-07
ssl-MIR828_MI0019355_Salvia_sclarea_miR828_stem-loop_126               44   1e-05
vvi-MIR828b_MI0007973_Vitis_vinifera_miR828b_stem-loop_72              42   5e-05

>mdm-MIR828b_MI0023134_158
          Length = 158

 Score =  111 bits (56), Expect = 6e-26
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1  ttcgtaatgtttcttgctcaaatgagtattccagccacagtttgcatgcagcttgc 56
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6  ttcgtaatgtttcttgctcaaatgagtattccagccacagtttgcatgcagcttgc 61



 Score =  105 bits (53), Expect = 4e-24
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 96  gcactggtgcttctgcaatcctgagatgctcatttgggcaagcaacgttacaa 148
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gcactggtgcttctgcaatcctgagatgctcatttgggcaagcaacgttacaa 153


>mdm-MIR828a_MI0023133_142
          Length = 142

 Score = 97.6 bits (49), Expect = 9e-22
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                               
Query: 4  gtaatgtttcttgctcaaatgagtattccagccacagtttgcatgcagcttgc 56
          |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9  gtaatgtttcttgctcaaatgagtattccagccacagtttgcctgcagcttgc 61



 Score = 75.8 bits (38), Expect = 3e-15
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                             
Query: 99  ctggtgcttctgcaatcctgagatgctcatttgggcaagcaacgttacaa 148
           |||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 88  ctggtgcttctgcaattctgagatgctcatttgagcaagcagcgttacaa 137


>aly-MIR828_MI0014606_Arabidopsis_lyrata_miR828_stem-loop_199
          Length = 199

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 5  taatgtttcttgctcaaatgagtattcca 33
          |||||||||||||| ||||||||||||||
Sbjct: 44 taatgtttcttgcttaaatgagtattcca 72



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 tgagatgctcatttgggcaagcaa 140
           ||||||||||||||| ||||||||
Sbjct: 127 tgagatgctcatttgagcaagcaa 150


>vvi-MIR828a_MI0007972_Vitis_vinifera_miR828a_stem-loop_122
          Length = 122

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  gtttcttgctcaaatgagtattcca 33
          |||||||||||||||||||||||||
Sbjct: 7  gtttcttgctcaaatgagtattcca 31


>ath-MIR828_MI0005384_Arabidopsis_thaliana_miR828_stem-loop_191
          Length = 191

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 5  taatgtttcttgctcaaatgagtattcca 33
          |||||||||||||| ||||||||||||||
Sbjct: 43 taatgtttcttgcttaaatgagtattcca 71



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 117 tgagatgctcatttgggcaagcaa 140
           ||||||||||||||| ||||||||
Sbjct: 121 tgagatgctcatttgagcaagcaa 144


>ssl-MIR828_MI0019355_Salvia_sclarea_miR828_stem-loop_126
          Length = 126

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 tcttgctcaaatgagtattcca 33
          ||||||||||||||||||||||
Sbjct: 1  tcttgctcaaatgagtattcca 22



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 ctgagatgctcatttgggcaa 136
           |||||||||||||||||||||
Sbjct: 104 ctgagatgctcatttgggcaa 124


>vvi-MIR828b_MI0007973_Vitis_vinifera_miR828b_stem-loop_72
          Length = 72

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 9  gtttcttgctcaaatgagtattcca 33
          ||||||||||||||||||| |||||
Sbjct: 8  gtttcttgctcaaatgagtgttcca 32


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.