(108 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR162a_MI0023009_93                                              184   3e-48
mdm-MIR162b_MI0023010_94                                              139   2e-34
cpa-MIR162a_MI0006308_Carica_papaya_miR162a_stem-loop_109             111   4e-26
gma-MIR162b_MI0017825_Glycine_max_miR162b_stem-loop_110               105   3e-24
gma-MIR162c_MI0018659_Glycine_max_miR162c_stem-loop_119               105   3e-24
aau-MIR162_MI0018984_Acacia_auriculiformis_miR162_stem-loop_115       100   2e-22
vun-MIR162_MI0019569_Vigna_unguiculata_miR162_stem-loop_121            98   6e-22
vvi-MIR162_MI0006502_Vitis_vinifera_miR162_stem-loop_103               92   4e-20
ghr-MIR162a_MI0005644_Gossypium_hirsutum_miR162a_stem-loop_148         90   2e-19
csi-MIR162_MI0013314_Citrus_sinensis_miR162_stem-loop_201              86   2e-18
mtr-MIR162_MI0001738_Medicago_truncatula_miR162_stem-loop_124          82   4e-17
gma-MIR162_MI0007208_Glycine_max_miR162_stem-loop_102                  72   4e-14
tcc-MIR162_MI0017463_Theobroma_cacao_miR162_stem-loop_131              68   6e-13
rco-MIR162_MI0013381_Ricinus_communis_miR162_stem-loop_101             66   2e-12
aly-MIR162b_MI0014526_Arabidopsis_lyrata_miR162b_stem-loop_184         66   2e-12
ptc-MIR162a_MI0002209_Populus_trichocarpa_miR162a_stem-loop_107        58   5e-10
ath-MIR162b_MI0000195_Arabidopsis_thaliana_miR162b_stem-loop_111       56   2e-09
sly-MIR162_MI0009975_Solanum_lycopersicum_miR162_stem-loop_99          56   2e-09
zma-MIR162_MI0001481_Zea_mays_miR162_stem-loop_130                     56   2e-09
ptc-MIR162c_MI0002211_Populus_trichocarpa_miR162c_stem-loop_107        52   3e-08
ptc-MIR162b_MI0002210_Populus_trichocarpa_miR162b_stem-loop_107        52   3e-08
ath-MIR162a_MI0000194_Arabidopsis_thaliana_miR162a_stem-loop_140       50   1e-07
aly-MIR162a_MI0014525_Arabidopsis_lyrata_miR162a_stem-loop_228         50   1e-07
sbi-MIR162_MI0013252_Sorghum_bicolor_miR162_stem-loop_127              48   5e-07
osa-MIR162a_MI0000667_Oryza_sativa_miR162a_stem-loop_171               48   5e-07
bdi-MIR162_MI0018213_Brachypodium_distachyon_miR162_stem-loop_133      44   8e-06
osa-MIR162b_MI0001102_Oryza_sativa_miR162b_stem-loop_134               40   1e-04

>mdm-MIR162a_MI0023009_93
          Length = 93

 Score =  184 bits (93), Expect = 3e-48
 Identities = 93/93 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   gcactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaac 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaac 60

                                            
Query: 69  atgaatcggtcgataaacctctgcatccagcgc 101
           |||||||||||||||||||||||||||||||||
Sbjct: 61  atgaatcggtcgataaacctctgcatccagcgc 93


>mdm-MIR162b_MI0023010_94
          Length = 94

 Score =  139 bits (70), Expect = 2e-34
 Identities = 89/94 (94%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   gcactggaggcagcggttcatcgatctgtttatgaga-tttgttgtgaaaaaacacagaa 67
           ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||  
Sbjct: 1   gcactggaggcagcggttcatcgatctgtttatgagattttgttgtgagtaaacacagtt 60

                                             
Query: 68  catgaatcggtcgataaacctctgcatccagcgc 101
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  catgaatcggtcgataaacctctgcatccagcgc 94


>cpa-MIR162a_MI0006308_Carica_papaya_miR162a_stem-loop_109
          Length = 109

 Score =  111 bits (56), Expect = 4e-26
 Identities = 84/92 (91%), Gaps = 1/92 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgaga-tttgttgtgaaaaaacacagaac 68
           |||||||||||||||||||||||||| ||  || || |||| ||||||||| ||||||||
Sbjct: 11  cactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcacagaac 70

                                           
Query: 69  atgaatcggtcgataaacctctgcatccagcg 100
           |||||||| |||||||||||||||||||||||
Sbjct: 71  atgaatcgatcgataaacctctgcatccagcg 102


>gma-MIR162b_MI0017825_Glycine_max_miR162b_stem-loop_110
          Length = 110

 Score =  105 bits (53), Expect = 3e-24
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaaca 69
           |||||||||||||||||||||||||| ||  |||  || |||||| || |||||| | ||
Sbjct: 12  cactggaggcagcggttcatcgatctcttcctgaatttggttgtggaagaacacaaagca 71

                                                
Query: 70  tgaatcggtcgataaacctctgcatccagcgctcact 106
            ||||||||||||||||||||||||||||||||||||
Sbjct: 72  agaatcggtcgataaacctctgcatccagcgctcact 108


>gma-MIR162c_MI0018659_Glycine_max_miR162c_stem-loop_119
          Length = 119

 Score =  105 bits (53), Expect = 3e-24
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaaca 69
           |||||||||||||||||||||||||| ||  |||  || |||||| || |||||| | ||
Sbjct: 16  cactggaggcagcggttcatcgatctcttcctgaatttggttgtggaagaacacaaagca 75

                                                
Query: 70  tgaatcggtcgataaacctctgcatccagcgctcact 106
            ||||||||||||||||||||||||||||||||||||
Sbjct: 76  agaatcggtcgataaacctctgcatccagcgctcact 112


>aau-MIR162_MI0018984_Acacia_auriculiformis_miR162_stem-loop_115
          Length = 115

 Score = 99.6 bits (50), Expect = 2e-22
 Identities = 87/98 (88%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaa-cacagaac 68
           |||||||||||||||||||||||||| ||  |||  |||||||||  |||| | || | |
Sbjct: 13  cactggaggcagcggttcatcgatctcttcctgaattttgttgtgtgaaaagcgcaaagc 72

                                                 
Query: 69  atgaatcggtcgataaacctctgcatccagcgctcact 106
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 73  atgaatcggtcgataaacctctgcatccagcgctcact 110


>vun-MIR162_MI0019569_Vigna_unguiculata_miR162_stem-loop_121
          Length = 121

 Score = 97.6 bits (49), Expect = 6e-22
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaaca 69
           |||||||||||||||||||||||||| ||  |||  || | |||| || |||||| | ||
Sbjct: 15  cactggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagca 74

                                                
Query: 70  tgaatcggtcgataaacctctgcatccagcgctcact 106
            ||||||||||||||||||||||||||||||||||||
Sbjct: 75  agaatcggtcgataaacctctgcatccagcgctcact 111


>vvi-MIR162_MI0006502_Vitis_vinifera_miR162_stem-loop_103
          Length = 103

 Score = 91.7 bits (46), Expect = 4e-20
 Identities = 87/98 (88%), Gaps = 2/98 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgagatttgttgtgaaaaaacacagaaca 69
           ||||||| |||||||||||||||||| ||  ||| ||| ||||||||||||  |||| ||
Sbjct: 7   cactggatgcagcggttcatcgatctcttcctgaaatt-gttgtgaaaaaag-cagatca 64

                                                 
Query: 70  tgaatcggtcgataaacctctgcatccagcgctcactc 107
            |||||||||||||||||||||||||||||| ||||||
Sbjct: 65  agaatcggtcgataaacctctgcatccagcgttcactc 102


>ghr-MIR162a_MI0005644_Gossypium_hirsutum_miR162a_stem-loop_148
          Length = 148

 Score = 89.7 bits (45), Expect = 2e-19
 Identities = 86/96 (89%), Gaps = 4/96 (4%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgaga--tttgttgtgaaaa-aacacaga 66
           |||||||||||||||||||||||||| ||  |||||  |||||||||| || |||||| |
Sbjct: 22  cactggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaa 81

                                               
Query: 67  -acatgaatcggtcgataaacctctgcatccagcgc 101
            |||||||||| ||||||||||||||||||||||||
Sbjct: 82  tacatgaatcgatcgataaacctctgcatccagcgc 117


>csi-MIR162_MI0013314_Citrus_sinensis_miR162_stem-loop_201
          Length = 201

 Score = 85.7 bits (43), Expect = 2e-18
 Identities = 91/104 (87%), Gaps = 6/104 (5%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgaga--tttgttgtgaaaaa--acacag 65
           |||||||||||||||||||||||||  ||| ||  |  ||||||||||||||  ||||| 
Sbjct: 87  cactggaggcagcggttcatcgatcactttgtgcaaattttgttgtgaaaaataacacaa 146

                                                       
Query: 66  aa--catgaatcggtcgataaacctctgcatccagcgctcactc 107
           ||  ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 147 aatacatgaatcgatcgataaacctctgcatccagcgctcactc 190


>mtr-MIR162_MI0001738_Medicago_truncatula_miR162_stem-loop_124
          Length = 124

 Score = 81.8 bits (41), Expect = 4e-17
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 66  aacatgaatcggtcgataaacctctgcatccagcgctcact 106
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  aacatgaatcggtcgataaacctctgcatccagcgctcact 115


>gma-MIR162_MI0007208_Glycine_max_miR162_stem-loop_102
          Length = 102

 Score = 71.9 bits (36), Expect = 4e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 68  catgaatcggtcgataaacctctgcatccagcgctcactc 107
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 63  catgaatcgatcgataaacctctgcatccagcgctcactc 102


>tcc-MIR162_MI0017463_Theobroma_cacao_miR162_stem-loop_131
          Length = 131

 Score = 67.9 bits (34), Expect = 6e-13
 Identities = 81/93 (87%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatgaga--tttgttgtga-aaaaacacaga 66
           |||||||||||||||||||||||||| ||  || ||  |||||||||| || |||||| |
Sbjct: 19  cactggaggcagcggttcatcgatctcttcctgggaattttgttgtgagaataacacaaa 78

                                            
Query: 67  -acatgaatcggtcgataaacctctgcatccag 98
            |||||| ||| |||||||||||||||||||||
Sbjct: 79  tacatgattcgatcgataaacctctgcatccag 111


>rco-MIR162_MI0013381_Ricinus_communis_miR162_stem-loop_101
          Length = 101

 Score = 65.9 bits (33), Expect = 2e-12
 Identities = 86/99 (86%), Gaps = 6/99 (6%)
 Strand = Plus / Plus

                                                                       
Query: 10  cactggaggcagcggttcatcgatctgtttatg--agattt-gttgtgaaa-aaacacag 65
           |||||||||||||||||||||||||| ||  ||  |||||| ||||||||| ||| | | 
Sbjct: 2   cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 61

                                                  
Query: 66  aac--atgaatcggtcgataaacctctgcatccagcgct 102
           |||  |||||||| |||||||||||||||||||||||||
Sbjct: 62  aacgcatgaatcgatcgataaacctctgcatccagcgct 100


>aly-MIR162b_MI0014526_Arabidopsis_lyrata_miR162b_stem-loop_184
          Length = 184

 Score = 65.9 bits (33), Expect = 2e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 68  catgaatcggtcgataaacctctgcatccagcgctcactct 108
           ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 103 catgaatcgatcgataaacctctgcatccagcgcttactct 143



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ctggaggcagcggttcatcgatc 34
          |||||||||||||||||||||||
Sbjct: 50 ctggaggcagcggttcatcgatc 72


>ptc-MIR162a_MI0002209_Populus_trichocarpa_miR162a_stem-loop_107
          Length = 107

 Score = 58.0 bits (29), Expect = 5e-10
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 66  aacatgaatcggtcgataaacctctgcatccagcgct 102
           |||||||| || |||||||||||||||||||||||||
Sbjct: 66  aacatgaaccgatcgataaacctctgcatccagcgct 102



 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 cactggaggcagcggttcatcgatct 35
          ||||||||||||||||||||||||||
Sbjct: 9  cactggaggcagcggttcatcgatct 34


>ath-MIR162b_MI0000195_Arabidopsis_thaliana_miR162b_stem-loop_111
          Length = 111

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 71  gaatcggtcgataaacctctgcatccagcgct 102
           |||||| |||||||||||||||||||||||||
Sbjct: 72  gaatcgatcgataaacctctgcatccagcgct 103



 Score = 46.1 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 12 ctggaggcagcggttcatcgatc 34
          |||||||||||||||||||||||
Sbjct: 12 ctggaggcagcggttcatcgatc 34


>sly-MIR162_MI0009975_Solanum_lycopersicum_miR162_stem-loop_99
          Length = 99

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 71 gaatcggtcgataaacctctgcatccag 98
          ||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99


>zma-MIR162_MI0001481_Zea_mays_miR162_stem-loop_130
          Length = 130

 Score = 56.0 bits (28), Expect = 2e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           ||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130


>ptc-MIR162c_MI0002211_Populus_trichocarpa_miR162c_stem-loop_107
          Length = 107

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 cactggaggcagcggttcatcgatct 35
          ||||||||||||||||||||||||||
Sbjct: 9  cactggaggcagcggttcatcgatct 34



 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98


>ptc-MIR162b_MI0002210_Populus_trichocarpa_miR162b_stem-loop_107
          Length = 107

 Score = 52.0 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 10 cactggaggcagcggttcatcgatct 35
          ||||||||||||||||||||||||||
Sbjct: 9  cactggaggcagcggttcatcgatct 34



 Score = 42.1 bits (21), Expect = 3e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 78 tcgataaacctctgcatccag 98
          |||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98


>ath-MIR162a_MI0000194_Arabidopsis_thaliana_miR162a_stem-loop_140
          Length = 140

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 68  catgaatcggtcgataaacctctgcatccagcg 100
           ||||||| | |||||||||||||||||||||||
Sbjct: 79  catgaatagatcgataaacctctgcatccagcg 111



 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 ctggaggcagcggttcatcgatct 35
          ||||||||||||||||||||||||
Sbjct: 25 ctggaggcagcggttcatcgatct 48


>aly-MIR162a_MI0014525_Arabidopsis_lyrata_miR162a_stem-loop_228
          Length = 228

 Score = 50.1 bits (25), Expect = 1e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 68  catgaatcggtcgataaacctctgcatccagcg 100
           ||||||| | |||||||||||||||||||||||
Sbjct: 126 catgaatagatcgataaacctctgcatccagcg 158



 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 12 ctggaggcagcggttcatcgatct 35
          ||||||||||||||||||||||||
Sbjct: 68 ctggaggcagcggttcatcgatct 91


>sbi-MIR162_MI0013252_Sorghum_bicolor_miR162_stem-loop_127
          Length = 127

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           |||||| |||||||||||||||||||||
Sbjct: 100 gaatcgatcgataaacctctgcatccag 127


>osa-MIR162a_MI0000667_Oryza_sativa_miR162a_stem-loop_171
          Length = 171

 Score = 48.1 bits (24), Expect = 5e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           |||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163


>bdi-MIR162_MI0018213_Brachypodium_distachyon_miR162_stem-loop_133
          Length = 133

 Score = 44.1 bits (22), Expect = 8e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 71  gaatcggtcgataaacctctgcatcc 96
           |||||| |||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcc 129


>osa-MIR162b_MI0001102_Oryza_sativa_miR162b_stem-loop_134
          Length = 134

 Score = 40.1 bits (20), Expect = 1e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 71  gaatcggtcgataaacctctgcatccag 98
           |||||| ||||||| |||||||||||||
Sbjct: 97  gaatcgatcgataagcctctgcatccag 124


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.