(102 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR447_MI0023124_97                                               190   9e-50
csi-MIR473_MI0016717_Citrus_sinensis_miR473_stem-loop_159              44   6e-06
gma-MIR5036_MI0017909_Glycine_max_miR5036_stem-loop_151                42   2e-05
aqc-MIR477e_MI0012102_Aquilegia_caerulea_miR477e_stem-loop_84          42   2e-05
aqc-MIR477c_MI0012105_Aquilegia_caerulea_miR477c_stem-loop_76          42   2e-05
aqc-MIR477g_MI0012100_Aquilegia_caerulea_miR477g_stem-loop_76          42   2e-05
csi-MIR477b_MI0016719_Citrus_sinensis_miR477b_stem-loop_138            42   2e-05
vvi-MIR447b_MI0016025_Vitis_vinifera_miR447b_stem-loop_117             40   1e-04
aqc-MIR477b_MI0012104_Aquilegia_caerulea_miR477b_stem-loop_72          38   4e-04

>mdm-MIR447_MI0023124_97
          Length = 97

 Score =  190 bits (95), Expect = 9e-50
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  caaggcatttttgttgctcactctccctcaagggcttcgaccaatgtcagacatgrcgag 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caaggcatttttgttgctcactctccctcaagggcttcgaccaatgtcagacatgrcgag 60

                                               
Query: 63 ctcgaagacttggggagagtgaataaaaagtgtcttg 99
          |||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctcgaagacttggggagagtgaataaaaagtgtcttg 97


>csi-MIR473_MI0016717_Citrus_sinensis_miR473_stem-loop_159
          Length = 159

 Score = 44.4 bits (22), Expect = 6e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 tcactctccctcaagggcttcg 41
          ||||||||||||||||||||||
Sbjct: 19 tcactctccctcaagggcttcg 40


>gma-MIR5036_MI0017909_Glycine_max_miR5036_stem-loop_151
          Length = 151

 Score = 42.4 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcactctccctcaagggcttc 40
          |||||||||||||||||||||
Sbjct: 14 tcactctccctcaagggcttc 34


>aqc-MIR477e_MI0012102_Aquilegia_caerulea_miR477e_stem-loop_84
          Length = 84

 Score = 42.4 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcactctccctcaagggcttc 40
          |||||||||||||||||||||
Sbjct: 5  tcactctccctcaagggcttc 25


>aqc-MIR477c_MI0012105_Aquilegia_caerulea_miR477c_stem-loop_76
          Length = 76

 Score = 42.4 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 20 tcactctccctcaagggcttc 40
          |||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttc 54


>aqc-MIR477g_MI0012100_Aquilegia_caerulea_miR477g_stem-loop_76
          Length = 76

 Score = 42.4 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 20 tcactctccctcaagggcttc 40
          |||||||||||||||||||||
Sbjct: 74 tcactctccctcaagggcttc 54


>csi-MIR477b_MI0016719_Citrus_sinensis_miR477b_stem-loop_138
          Length = 138

 Score = 42.4 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 20 tcactctccctcaagggcttc 40
          |||||||||||||||||||||
Sbjct: 17 tcactctccctcaagggcttc 37


>vvi-MIR447b_MI0016025_Vitis_vinifera_miR447b_stem-loop_117
          Length = 117

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 5  aggcatttttgttgctcactctccctcaagggcttc 40
          |||||||| | |||||||||||  ||||||||||||
Sbjct: 10 aggcatttctattgctcactctttctcaagggcttc 45


>aqc-MIR477b_MI0012104_Aquilegia_caerulea_miR477b_stem-loop_72
          Length = 72

 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 22 actctccctcaagggcttc 40
          |||||||||||||||||||
Sbjct: 1  actctccctcaagggcttc 19


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.