(186 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR159c_MI0023157_169                                             335   3e-93
mdm-MIR159a_MI0023002_169                                             335   3e-93
mdm-MIR159b_MI0023003_169                                             268   5e-73
ptc-MIR159d_MI0002198_Populus_trichocarpa_miR159d_stem-loop_194        76   4e-15
pta-MIR319_MI0005786_Pinus_taeda_miR319_stem-loop_206                  48   9e-07
pta-MIR159a_MI0005778_Pinus_taeda_miR159a_stem-loop_210                48   9e-07
osa-MIR159c_MI0001094_Oryza_sativa_miR159c_stem-loop_197               40   2e-04
smo-MIR159_MI0006050_Selaginella_moellendorffii_miR159_stem-loop...    40   2e-04
pta-MIR159c_MI0005780_Pinus_taeda_miR159c_stem-loop_85                 40   2e-04
zma-MIR159d_MI0001812_Zea_mays_miR159d_stem-loop_217                   40   2e-04
sof-MIR159c_MI0001760_Saccharum_officinarum_miR159c_stem-loop_238      40   2e-04
zma-MIR159c_MI0001811_Zea_mays_miR159c_stem-loop_217                   40   2e-04
sbi-MIR159b_MI0001851_Sorghum_bicolor_miR159b_stem-loop_253            40   2e-04
osa-MIR159d_MI0001095_Oryza_sativa_miR159d_stem-loop_189               38   0.001
osa-MIR159e_MI0001096_Oryza_sativa_miR159e_stem-loop_191               38   0.001
bdi-MIR159_MI0018117_Brachypodium_distachyon_miR159_stem-loop_234      38   0.001
osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188               38   0.001
aly-MIR159c_MI0014517_Arabidopsis_lyrata_miR159c_stem-loop_220         38   0.001
ath-MIR159c_MI0001085_Arabidopsis_thaliana_miR159c_stem-loop_225       38   0.001

>mdm-MIR159c_MI0023157_169
          Length = 169

 Score =  335 bits (169), Expect = 3e-93
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggagctccttttgattcaaaagcaggagggagagagggttttacactgctgctggttcat 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggagctccttttgattcaaaagcaggagggagagagggttttacactgctgctggttcat 60

                                                                       
Query: 70  ggatgcccctgaggtgcgcacgataaggaaactgcgcagcttaagggtttgcatggccca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggatgcccctgaggtgcgcacgataaggaaactgcgcagcttaagggtttgcatggccca 120

                                                            
Query: 130 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 169


>mdm-MIR159a_MI0023002_169
          Length = 169

 Score =  335 bits (169), Expect = 3e-93
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggagctccttttgattcaaaagcaggagggagagagggttttacactgctgctggttcat 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggagctccttttgattcaaaagcaggagggagagagggttttacactgctgctggttcat 60

                                                                       
Query: 70  ggatgcccctgaggtgcgcacgataaggaaactgcgcagcttaagggtttgcatggccca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggatgcccctgaggtgcgcacgataaggaaactgcgcagcttaagggtttgcatggccca 120

                                                            
Query: 130 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 169


>mdm-MIR159b_MI0023003_169
          Length = 169

 Score =  268 bits (135), Expect = 5e-73
 Identities = 160/169 (94%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggagctccttttgattcaaaagcaggagggagagagggttttacactgctgctggttcat 69
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1   ggagctccctttgattcaaaagcaggagggagagagggtcttacactgctgctggttcat 60

                                                                       
Query: 70  ggatgcccctgaggtgcgcacgataaggaaactgcgcagcttaagggtttgcatggccca 129
           |||| || ||| |||||||||| | |||||||||||||| ||||||||||||||| ||||
Sbjct: 61  ggatacctctggggtgcgcacggtraggaaactgcgcagtttaagggtttgcatgaccca 120

                                                            
Query: 130 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggagatgtgaattccttctcctctcctttcttggattgaagggagctcc 169


>ptc-MIR159d_MI0002198_Populus_trichocarpa_miR159d_stem-loop_194
          Length = 194

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 66/74 (89%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                       
Query: 106 cagcttaagggtttgcatggcccaggagatgt-gaattccttctcctctcctttcttgga 164
           |||||||||||||||||||||| |||||| || |  | ||||||||| || |||||||||
Sbjct: 111 cagcttaagggtttgcatggccaaggagacgttgcctgccttctcctttcgtttcttgga 170

                         
Query: 165 ttgaagggagctcc 178
           ||||||||||||||
Sbjct: 171 ttgaagggagctcc 184


>pta-MIR319_MI0005786_Pinus_taeda_miR319_stem-loop_206
          Length = 206

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 156 tttcttggattgaagggagctcca 179
           ||||||||||||||||||||||||
Sbjct: 30  tttcttggattgaagggagctcca 7


>pta-MIR159a_MI0005778_Pinus_taeda_miR159a_stem-loop_210
          Length = 210

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 156 tttcttggattgaagggagctcca 179
           ||||||||||||||||||||||||
Sbjct: 181 tttcttggattgaagggagctcca 204


>osa-MIR159c_MI0001094_Oryza_sativa_miR159c_stem-loop_197
          Length = 197

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 ttggattgaagggagctcca 179
           ||||||||||||||||||||
Sbjct: 168 ttggattgaagggagctcca 187


>smo-MIR159_MI0006050_Selaginella_moellendorffii_miR159_stem-
           loop_279
          Length = 279

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268


>pta-MIR159c_MI0005780_Pinus_taeda_miR159c_stem-loop_85
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 49  cttggattgaagggagctcc 68


>zma-MIR159d_MI0001812_Zea_mays_miR159d_stem-loop_217
          Length = 217

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197


>sof-MIR159c_MI0001760_Saccharum_officinarum_miR159c_stem-loop_238
          Length = 238

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 199 cttggattgaagggagctcc 218


>zma-MIR159c_MI0001811_Zea_mays_miR159c_stem-loop_217
          Length = 217

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197


>sbi-MIR159b_MI0001851_Sorghum_bicolor_miR159b_stem-loop_253
          Length = 253

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 cttggattgaagggagctcc 178
           ||||||||||||||||||||
Sbjct: 214 cttggattgaagggagctcc 233


>osa-MIR159d_MI0001095_Oryza_sativa_miR159d_stem-loop_189
          Length = 189

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 160 ttggattgaagggagctcc 178
           |||||||||||||||||||
Sbjct: 160 ttggattgaagggagctcc 178


>osa-MIR159e_MI0001096_Oryza_sativa_miR159e_stem-loop_191
          Length = 191

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 160 ttggattgaagggagctcc 178
           |||||||||||||||||||
Sbjct: 162 ttggattgaagggagctcc 180


>bdi-MIR159_MI0018117_Brachypodium_distachyon_miR159_stem-loop_234
          Length = 234

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 159 cttggattgaagggagctc 177
           |||||||||||||||||||
Sbjct: 184 cttggattgaagggagctc 202


>osa-MIR159f_MI0001097_Oryza_sativa_miR159f_stem-loop_188
          Length = 188

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 159 cttggattgaagggagctc 177
           |||||||||||||||||||
Sbjct: 158 cttggattgaagggagctc 176


>aly-MIR159c_MI0014517_Arabidopsis_lyrata_miR159c_stem-loop_220
          Length = 220

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 160 ttggattgaagggagctcc 178
           |||||||||||||||||||
Sbjct: 198 ttggattgaagggagctcc 216


>ath-MIR159c_MI0001085_Arabidopsis_thaliana_miR159c_stem-loop_225
          Length = 225

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 160 ttggattgaagggagctcc 178
           |||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcc 214


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.