3
         (103 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR482d_MI0023143_106                                             202   2e-53
mdm-MIR482b_MI0023126_106                                             202   2e-53
mdm-MIR482c_MI0023127_141                                              70   1e-13
csi-MIR482a_MI0016722_Citrus_sinensis_miR482a_stem-loop_129            38   4e-04

>mdm-MIR482d_MI0023143_106
          Length = 106

 Score =  202 bits (101), Expect = 2e-53
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagttgttggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ggaagttgttggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattca 61

                                                      
Query: 61  agagataaaatttctttcctatccctcccattccttckatttt 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agagataaaatttctttcctatccctcccattccttckatttt 104


>mdm-MIR482b_MI0023126_106
          Length = 106

 Score =  202 bits (101), Expect = 2e-53
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaagttgttggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   ggaagttgttggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattca 61

                                                      
Query: 61  agagataaaatttctttcctatccctcccattccttckatttt 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  agagataaaatttctttcctatccctcccattccttckatttt 104


>mdm-MIR482c_MI0023127_141
          Length = 141

 Score = 70.3 bits (35), Expect = 1e-13
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                       
Query: 10  tggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattcaagagataaa 69
           |||| ||||||||||||||||||| ||||||  || |  ||  |||||||  |||||  |
Sbjct: 28  tggagtggaagggtaggaaagaagtaacttcctttttrggtctcaaattctggagatcga 87

                                            
Query: 70  atttctttcctatccctcccattccttckattt 102
           |||||||||||| ||||||||||||||| ||||
Sbjct: 88  atttctttcctaaccctcccattccttcaattt 120


>csi-MIR482a_MI0016722_Citrus_sinensis_miR482a_stem-loop_129
          Length = 129

 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 69  aatttctttcctatccctcccattcct 95
           |||||||| ||||| ||||||||||||
Sbjct: 94  aatttcttccctatgcctcccattcct 120


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.