(128 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR398a_MI0023102_137                                             246   1e-66
vvi-MIR398a_MI0006572_Vitis_vinifera_miR398a_stem-loop_103             73   2e-14
ptc-MIR398a_MI0002335_Populus_trichocarpa_miR398a_stem-loop_109        61   9e-11
aqc-MIR398a_MI0012096_Aquilegia_caerulea_miR398a_stem-loop_92          57   1e-09
gra-MIR398_MI0013535_Gossypium_raimondii_miR398_stem-loop_123          55   6e-09
mtr-MIR398a_MI0005599_Medicago_truncatula_miR398a_stem-loop_98         55   6e-09
ghr-MIR398_MI0013544_Gossypium_hirsutum_miR398_stem-loop_106           55   6e-09
rco-MIR398a_MI0013420_Ricinus_communis_miR398a_stem-loop_91            53   2e-08
csi-MIR398_MI0013305_Citrus_sinensis_miR398_stem-loop_225              53   2e-08
ath-MIR398a_MI0001017_Arabidopsis_thaliana_miR398a_stem-loop_105       53   2e-08
bdi-MIR398b_MI0018150_Brachypodium_distachyon_miR398b_stem-loop_163    53   2e-08
gma-MIR398a_MI0001787_Glycine_max_miR398a_stem-loop_116                51   9e-08
osa-MIR398a_MI0001051_Oryza_sativa_miR398a_stem-loop_115               51   9e-08
gma-MIR398b_MI0001788_Glycine_max_miR398b_stem-loop_135                51   9e-08
aly-MIR398a_MI0014585_Arabidopsis_lyrata_miR398a_stem-loop_182         51   9e-08
bol-MIR398a_MI0010667_Brassica_oleracea_miR398a_stem-loop_95           49   4e-07
ahy-MIR398_MI0015339_Arachis_hypogaea_miR398_stem-loop_153             49   4e-07
tcc-MIR398b_MI0017518_Theobroma_cacao_miR398b_stem-loop_165            45   6e-06
ssl-MIR398_MI0019353_Salvia_sclarea_miR398_stem-loop_71                43   2e-05
ath-MIR398b_MI0001018_Arabidopsis_thaliana_miR398b_stem-loop_116       41   1e-04
aly-MIR398b_MI0014586_Arabidopsis_lyrata_miR398b_stem-loop_142         41   1e-04
ath-MIR398c_MI0001019_Arabidopsis_thaliana_miR398c_stem-loop_115       41   1e-04

>mdm-MIR398a_MI0023102_137
          Length = 137

 Score =  246 bits (122), Expect = 1e-66
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagcaratggtcaccccaaaggtgtgaaactgagaacacaaatggtgttgycygcgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tatagcaratggtcaccccaaaggtgtgaaactgagaacacaaatggtgttgycygcgac 65

                                                                       
Query: 61  aaacattgtaagcactgcttacgcattttgtgttctcaggtcacccctttggggcacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aaacattgtaagcactgcttacgcattttgtgttctcaggtcacccctttggggcacctt 125

                   
Query: 121 gcttacat 128
           ||||||||
Sbjct: 126 gcttacat 133


>vvi-MIR398a_MI0006572_Vitis_vinifera_miR398a_stem-loop_103
          Length = 103

 Score = 73.0 bits (36), Expect = 2e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 83  gcattttgtgttctcaggtcacccctttggggcacc 118
           ||||||||||||||||||||||||||||||||||||
Sbjct: 67  gcattttgtgttctcaggtcacccctttggggcacc 102


>ptc-MIR398a_MI0002335_Populus_trichocarpa_miR398a_stem-loop_109
          Length = 109

 Score = 60.9 bits (30), Expect = 9e-11
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 89  tgtgttctcaggtcacccctttggggcacc 118
           ||||||||||||||||||||||||||||||
Sbjct: 80  tgtgttctcaggtcacccctttggggcacc 109


>aqc-MIR398a_MI0012096_Aquilegia_caerulea_miR398a_stem-loop_92
          Length = 92

 Score = 56.9 bits (28), Expect = 1e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 87  tttgtgttctcaggtcacccctttgggg 114
           ||||||||||||||||||||||||||||
Sbjct: 64  tttgtgttctcaggtcacccctttgggg 91


>gra-MIR398_MI0013535_Gossypium_raimondii_miR398_stem-loop_123
          Length = 123

 Score = 54.9 bits (27), Expect = 6e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 88  ttgtgttctcaggtcacccctttgggg 114
           |||||||||||||||||||||||||||
Sbjct: 65  ttgtgttctcaggtcacccctttgggg 91


>mtr-MIR398a_MI0005599_Medicago_truncatula_miR398a_stem-loop_98
          Length = 98

 Score = 54.9 bits (27), Expect = 6e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 85  attttgtgttctcaggtcacccctttg 111
           |||||||||||||||||||||||||||
Sbjct: 69  attttgtgttctcaggtcacccctttg 95


>ghr-MIR398_MI0013544_Gossypium_hirsutum_miR398_stem-loop_106
          Length = 106

 Score = 54.9 bits (27), Expect = 6e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 88  ttgtgttctcaggtcacccctttgggg 114
           |||||||||||||||||||||||||||
Sbjct: 65  ttgtgttctcaggtcacccctttgggg 91


>rco-MIR398a_MI0013420_Ricinus_communis_miR398a_stem-loop_91
          Length = 91

 Score = 52.8 bits (26), Expect = 2e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 89  tgtgttctcaggtcacccctttgggg 114
           ||||||||||||||||||||||||||
Sbjct: 66  tgtgttctcaggtcacccctttgggg 91


>csi-MIR398_MI0013305_Citrus_sinensis_miR398_stem-loop_225
          Length = 225

 Score = 52.8 bits (26), Expect = 2e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 88  ttgtgttctcaggtcacccctttggg 113
           ||||||||||||||||||||||||||
Sbjct: 131 ttgtgttctcaggtcacccctttggg 156


>ath-MIR398a_MI0001017_Arabidopsis_thaliana_miR398a_stem-loop_105
          Length = 105

 Score = 52.8 bits (26), Expect = 2e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ttttgtgttctcaggtcacccctttg 111
           ||||||||||||||||||||||||||
Sbjct: 72  ttttgtgttctcaggtcacccctttg 97


>bdi-MIR398b_MI0018150_Brachypodium_distachyon_miR398b_stem-loop_163
          Length = 163

 Score = 52.8 bits (26), Expect = 2e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 88  ttgtgttctcaggtcacccctttggg 113
           ||||||||||||||||||||||||||
Sbjct: 100 ttgtgttctcaggtcacccctttggg 125


>gma-MIR398a_MI0001787_Glycine_max_miR398a_stem-loop_116
          Length = 116

 Score = 50.8 bits (25), Expect = 9e-08
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 87  tttgtgttctcaggtcacccctttg 111
           |||||||||||||||||||||||||
Sbjct: 75  tttgtgttctcaggtcacccctttg 99


>osa-MIR398a_MI0001051_Oryza_sativa_miR398a_stem-loop_115
          Length = 115

 Score = 50.8 bits (25), Expect = 9e-08
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 89  tgtgttctcaggtcacccctttggg 113
           |||||||||||||||||||||||||
Sbjct: 85  tgtgttctcaggtcacccctttggg 109


>gma-MIR398b_MI0001788_Glycine_max_miR398b_stem-loop_135
          Length = 135

 Score = 50.8 bits (25), Expect = 9e-08
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 87  tttgtgttctcaggtcacccctttg 111
           |||||||||||||||||||||||||
Sbjct: 94  tttgtgttctcaggtcacccctttg 118


>aly-MIR398a_MI0014585_Arabidopsis_lyrata_miR398a_stem-loop_182
          Length = 182

 Score = 50.8 bits (25), Expect = 9e-08
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 87  tttgtgttctcaggtcacccctttg 111
           |||||||||||||||||||||||||
Sbjct: 120 tttgtgttctcaggtcacccctttg 144


>bol-MIR398a_MI0010667_Brassica_oleracea_miR398a_stem-loop_95
          Length = 95

 Score = 48.8 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 88  ttgtgttctcaggtcacccctttg 111
           ||||||||||||||||||||||||
Sbjct: 70  ttgtgttctcaggtcacccctttg 93


>ahy-MIR398_MI0015339_Arachis_hypogaea_miR398_stem-loop_153
          Length = 153

 Score = 48.8 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 88  ttgtgttctcaggtcacccctttg 111
           ||||||||||||||||||||||||
Sbjct: 128 ttgtgttctcaggtcacccctttg 151


>tcc-MIR398b_MI0017518_Theobroma_cacao_miR398b_stem-loop_165
          Length = 165

 Score = 44.8 bits (22), Expect = 6e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  ttgtgttctcaggtcacccctt 109
           ||||||||||||||||||||||
Sbjct: 124 ttgtgttctcaggtcacccctt 145


>ssl-MIR398_MI0019353_Salvia_sclarea_miR398_stem-loop_71
          Length = 71

 Score = 42.8 bits (21), Expect = 2e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  ttgtgttctcaggtcacccct 108
           |||||||||||||||||||||
Sbjct: 50  ttgtgttctcaggtcacccct 70


>ath-MIR398b_MI0001018_Arabidopsis_thaliana_miR398b_stem-loop_116
          Length = 116

 Score = 40.8 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  tgtgttctcaggtcacccct 108
           ||||||||||||||||||||
Sbjct: 86  tgtgttctcaggtcacccct 105


>aly-MIR398b_MI0014586_Arabidopsis_lyrata_miR398b_stem-loop_142
          Length = 142

 Score = 40.8 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  tgtgttctcaggtcacccct 108
           ||||||||||||||||||||
Sbjct: 91  tgtgttctcaggtcacccct 110


>ath-MIR398c_MI0001019_Arabidopsis_thaliana_miR398c_stem-loop_115
          Length = 115

 Score = 40.8 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 89  tgtgttctcaggtcacccct 108
           ||||||||||||||||||||
Sbjct: 85  tgtgttctcaggtcacccct 104


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.