(104 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR3627a_MI0023120_85                                             168   2e-43
mdm-MIR3627c_MI0023122_89                                             105   2e-24
mdm-MIR3627b_MI0023121_87                                              80   1e-16

>mdm-MIR3627a_MI0023120_85
          Length = 85

 Score =  168 bits (85), Expect = 2e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 12 ggatttatgttcgcaggagagatggcactaattgtgccacaattgtcaataattgttgcc 71
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggatttatgttcgcaggagagatggcactaattgtgccacaattgtcaataattgttgcc 60

                                   
Query: 72 atctcttctgtgaccaaaaagatct 96
          |||||||||||||||||||||||||
Sbjct: 61 atctcttctgtgaccaaaaagatct 85


>mdm-MIR3627c_MI0023122_89
          Length = 89

 Score =  105 bits (53), Expect = 2e-24
 Identities = 77/84 (91%), Gaps = 2/84 (2%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggggatttatgttcgcaggagagatggcactaattgtgccacaatt--gtcaataattgt 67
          ||||||||||||||||||||||||||||||||||||| |  |||||  ||||| ||||||
Sbjct: 1  ggggatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgt 60

                                  
Query: 68 tgccatctcttctgtgaccaaaaa 91
          |||||||||| |||||||||||||
Sbjct: 61 tgccatctctcctgtgaccaaaaa 84


>mdm-MIR3627b_MI0023121_87
          Length = 87

 Score = 79.8 bits (40), Expect = 1e-16
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                      
Query: 13 gatttatgttcgcaggagagatggcactaattgtgccacaattgtcaataattgttgcca 72
          |||||||||||||||||||||||||||||||||||| |||| |   |  |||||||||||
Sbjct: 4  gatttatgttcgcaggagagatggcactaattgtgctacaactacaagcaattgttgcca 63

                              
Query: 73 tctcttctgtgaccaaaaag 92
          ||| | | ||||||||||||
Sbjct: 64 tctttcccgtgaccaaaaag 83


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.