(124 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR3627b_MI0023121_87                                             172   2e-44
mdm-MIR3627a_MI0023120_85                                              80   2e-16
mdm-MIR3627c_MI0023122_89                                              78   7e-16

>mdm-MIR3627b_MI0023121_87
          Length = 87

 Score =  172 bits (87), Expect = 2e-44
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  ggagatttatgttcgcaggagagatggcactaattgtgctacaactacaagcaattgttg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggagatttatgttcgcaggagagatggcactaattgtgctacaactacaagcaattgttg 60

                                      
Query: 80  ccatctttcccgtgaccaaaaagctct 106
           |||||||||||||||||||||||||||
Sbjct: 61  ccatctttcccgtgaccaaaaagctct 87


>mdm-MIR3627a_MI0023120_85
          Length = 85

 Score = 79.8 bits (40), Expect = 2e-16
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatttatgttcgcaggagagatggcactaattgtgctacaactacaagcaattgttgcca 82
           |||||||||||||||||||||||||||||||||||| |||| |   |  |||||||||||
Sbjct: 2   gatttatgttcgcaggagagatggcactaattgtgccacaattgtcaataattgttgcca 61

                               
Query: 83  tctttcccgtgaccaaaaag 102
           ||| | | ||||||||||||
Sbjct: 62  tctcttctgtgaccaaaaag 81


>mdm-MIR3627c_MI0023122_89
          Length = 89

 Score = 77.8 bits (39), Expect = 7e-16
 Identities = 75/86 (87%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatttatgttcgcaggagagatggcactaattgtgctacaactac--aagcaattgttgc 80
           |||||||||||||||||||||||||||||||||| || ||| | |   | ||||||||||
Sbjct: 4   gatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgttgc 63

                                     
Query: 81  catctttcccgtgaccaaaaagctct 106
           ||||| ||| ||||||||||| ||||
Sbjct: 64  catctctcctgtgaccaaaaatctct 89


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.