(262 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR171i_MI0023050_155                                             307   9e-85
gma-MIR171h_MI0017905_Glycine_max_miR171h_stem-loop_151                74   2e-14
vvi-MIR479_MI0006579_Vitis_vinifera_miR479_stem-loop_94                62   9e-11
csi-MIR479_MI0016721_Citrus_sinensis_miR479_stem-loop_147              60   4e-10
csi-MIR171b_MI0016698_Citrus_sinensis_miR171b_stem-loop_165            60   4e-10
ptc-MIR171l_MI0007032_Populus_trichocarpa_miR171l_stem-loop_112        58   1e-09
sbi-MIR171f_MI0001854_Sorghum_bicolor_miR171f_stem-loop_119            52   9e-08
gma-MIR171b_MI0007217_Glycine_max_miR171b_stem-loop_92                 50   3e-07
osa-MIR171h_MI0001147_Oryza_sativa_miR171h_stem-loop_101               48   1e-06
zma-MIR171k_MI0001843_Zea_mays_miR171k_stem-loop_104                   48   1e-06
sbi-MIR171e_MI0001570_Sorghum_bicolor_miR171e_stem-loop_124            48   1e-06
ptc-MIR171n_MI0007034_Populus_trichocarpa_miR171n_stem-loop_101        46   5e-06
ptc-MIR171m_MI0007033_Populus_trichocarpa_miR171m_stem-loop_101        46   5e-06
ghr-MIR479_MI0013545_Gossypium_hirsutum_miR479_stem-loop_97            44   2e-05
zma-MIR171h_MI0001844_Zea_mays_miR171h_stem-loop_124                   44   2e-05

>mdm-MIR171i_MI0023050_155
          Length = 155

 Score =  307 bits (155), Expect = 9e-85
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 56  tgcaaaagcaaacatggtgtgatattggttttggctcatatctctgataattagcttatc 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgcaaaagcaaacatggtgtgatattggttttggctcatatctctgataattagcttatc 60

                                                                       
Query: 116 ttcgatcataaatcgtcatgatgcacaacaaagactagtactacgtactctttgagatga 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcgatcataaatcgtcatgatgcacaacaaagactagtactacgtactctttgagatga 120

                                              
Query: 176 gccgaaccaatatcactcttgtatgcttctttgca 210
           |||||||||||||||||||||||||||||||||||
Sbjct: 121 gccgaaccaatatcactcttgtatgcttctttgca 155


>gma-MIR171h_MI0017905_Glycine_max_miR171h_stem-loop_151
          Length = 151

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 167 ttgagatgagccgaaccaatatcactcttgtatgcttctttgcatatatatat 219
           |||||| |||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct: 63  ttgagacgagccgaatcaatatcactcttgtttgcttcattgcatatatatat 115


>vvi-MIR479_MI0006579_Vitis_vinifera_miR479_stem-loop_94
          Length = 94

 Score = 61.9 bits (31), Expect = 9e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 174 gagccgaaccaatatcactcttgtatgcttc 204
           |||||||||||||||||||||||||||||||
Sbjct: 64  gagccgaaccaatatcactcttgtatgcttc 94


>csi-MIR479_MI0016721_Citrus_sinensis_miR479_stem-loop_147
          Length = 147

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 174 gagccgaaccaatatcactcttgtatgcttcttt 207
           |||||||| |||||||||||||||||||||||||
Sbjct: 98  gagccgaatcaatatcactcttgtatgcttcttt 131



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 agatgagccgaaccaatatcac 191
           ||||||||||||||||||||||
Sbjct: 42  agatgagccgaaccaatatcac 21


>csi-MIR171b_MI0016698_Citrus_sinensis_miR171b_stem-loop_165
          Length = 165

 Score = 60.0 bits (30), Expect = 4e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 174 gagccgaaccaatatcactcttgtatgcttcttt 207
           |||||||| |||||||||||||||||||||||||
Sbjct: 123 gagccgaatcaatatcactcttgtatgcttcttt 156



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 agatgagccgaaccaatatcac 191
           ||||||||||||||||||||||
Sbjct: 67  agatgagccgaaccaatatcac 46


>ptc-MIR171l_MI0007032_Populus_trichocarpa_miR171l_stem-loop_112
          Length = 112

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 174 gagccgaaccaatatcactcttgtatgcttctt 206
           |||||||| ||||||||||||||||||||||||
Sbjct: 79  gagccgaatcaatatcactcttgtatgcttctt 111


>sbi-MIR171f_MI0001854_Sorghum_bicolor_miR171f_stem-loop_119
          Length = 119

 Score = 52.0 bits (26), Expect = 9e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 171 gatgagccgaaccaatatcactcttgtatgcttc 204
           ||||||||||||||||||||||| ||||| ||||
Sbjct: 79  gatgagccgaaccaatatcactcatgtattcttc 112


>gma-MIR171b_MI0007217_Glycine_max_miR171b_stem-loop_92
          Length = 92

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 167 ttgagatgagccgaaccaatatcactcttgtatgctt 203
           |||||| |||||||| ||||||||||||||| |||||
Sbjct: 56  ttgagacgagccgaatcaatatcactcttgtttgctt 92


>osa-MIR171h_MI0001147_Oryza_sativa_miR171h_stem-loop_101
          Length = 101

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 173 tgagccgaaccaatatcactcttgtatgcttc 204
           ||||||||||||||||||||| ||||| ||||
Sbjct: 55  tgagccgaaccaatatcactcatgtattcttc 86


>zma-MIR171k_MI0001843_Zea_mays_miR171k_stem-loop_104
          Length = 104

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 173 tgagccgaaccaatatcactcttgtatgcttc 204
           ||||||||||||||||||||| ||||| ||||
Sbjct: 66  tgagccgaaccaatatcactcatgtattcttc 97


>sbi-MIR171e_MI0001570_Sorghum_bicolor_miR171e_stem-loop_124
          Length = 124

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 173 tgagccgaaccaatatcactcttgtatgcttc 204
           ||||||||||||||||||||| ||||| ||||
Sbjct: 86  tgagccgaaccaatatcactcatgtattcttc 117


>ptc-MIR171n_MI0007034_Populus_trichocarpa_miR171n_stem-loop_101
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 174 gagccgaaccaatatcactcttgtatgcttc 204
           |||||||| |||||||||||||||| |||||
Sbjct: 71  gagccgaatcaatatcactcttgtacgcttc 101


>ptc-MIR171m_MI0007033_Populus_trichocarpa_miR171m_stem-loop_101
          Length = 101

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 174 gagccgaaccaatatcactcttgtatgcttc 204
           |||||||| |||||||||||||||| |||||
Sbjct: 71  gagccgaatcaatatcactcttgtacgcttc 101


>ghr-MIR479_MI0013545_Gossypium_hirsutum_miR479_stem-loop_97
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 agatgagccgaaccaatatcac 191
           ||||||||||||||||||||||
Sbjct: 39  agatgagccgaaccaatatcac 18



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 174 gagccgaaccaatatcactcttgtatgctt 203
           |||||||| ||||||||||| |||||||||
Sbjct: 64  gagccgaatcaatatcactcatgtatgctt 93


>zma-MIR171h_MI0001844_Zea_mays_miR171h_stem-loop_124
          Length = 124

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 173 tgagccgaaccaatatcactcttgta 198
           ||||||||||||||||||||| ||||
Sbjct: 86  tgagccgaaccaatatcactcatgta 111


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.