0
         (130 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR5225c_MI0023156_119                                            236   1e-63
mdm-MIR5225a_MI0023160_144                                             60   2e-10
mdm-MIR5225b_MI0023161_144                                             60   2e-10

>mdm-MIR5225c_MI0023156_119
          Length = 119

 Score =  236 bits (119), Expect = 1e-63
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcgaaatatcaaatcgtcgggacttctgtcgtgggtgagatggtgccgatgccacgtaat 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcgaaatatcaaatcgtcgggacttctgtcgtgggtgagatggtgccgatgccacgtaat 60

                                                                      
Query: 68  tcggggcagcgagcttcatctctcctcgacagaagcctctaatgctttgattctacaga 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcggggcagcgagcttcatctctcctcgacagaagcctctaatgctttgattctacaga 119


>mdm-MIR5225a_MI0023160_144
          Length = 144

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 65  aattcggggcagcgagcttcatctctcctcgacagaagcctctaatgctttgat 118
           ||||| || |||||||||||||| ||||||||| ||||||||| | ||||||||
Sbjct: 91  aattcaggccagcgagcttcatccctcctcgactgaagcctctcacgctttgat 144



 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 15 atcaaatcgtcgggacttctgtcgtgggtgagatggtgccga 56
          |||||| ||| |||||||||||||  ||||||||||||||||
Sbjct: 1  atcaaagcgtagggacttctgtcgaaggtgagatggtgccga 42


>mdm-MIR5225b_MI0023161_144
          Length = 144

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 65  aattcggggcagcgagcttcatctctcctcgacagaagcctctaatgctttgat 118
           ||||| || |||||||||||||| ||||||||| ||||||||| | ||||||||
Sbjct: 91  aattcaggccagcgagcttcatccctcctcgactgaagcctctcacgctttgat 144



 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 15 atcaaatcgtcgggacttctgtcgtgggtgagatggtgccga 56
          |||||| ||| |||||||||||||  ||||||||||||||||
Sbjct: 1  atcaaagcgtagggacttctgtcgaaggtgagatggtgccga 42


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.