(128 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR3627c_MI0023122_89                                             176   1e-45
mdm-MIR3627a_MI0023120_85                                             101   5e-23
mdm-MIR3627b_MI0023121_87                                              78   7e-16

>mdm-MIR3627c_MI0023122_89
          Length = 89

 Score =  176 bits (89), Expect = 1e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                       
Query: 21  ggggatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgt 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggggatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgt 60

                                        
Query: 81  tgccatctctcctgtgaccaaaaatctct 109
           |||||||||||||||||||||||||||||
Sbjct: 61  tgccatctctcctgtgaccaaaaatctct 89


>mdm-MIR3627a_MI0023120_85
          Length = 85

 Score =  101 bits (51), Expect = 5e-23
 Identities = 75/82 (91%), Gaps = 2/82 (2%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgttg 82
           ||||||||||||||||||||||||||||||||||| |  |||||  ||||| ||||||||
Sbjct: 1   ggatttatgttcgcaggagagatggcactaattgtgccacaatt--gtcaataattgttg 58

                                 
Query: 83  ccatctctcctgtgaccaaaaa 104
           |||||||| |||||||||||||
Sbjct: 59  ccatctcttctgtgaccaaaaa 80


>mdm-MIR3627b_MI0023121_87
          Length = 87

 Score = 77.8 bits (39), Expect = 7e-16
 Identities = 75/86 (87%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                       
Query: 24  gatttatgttcgcaggagagatggcactaattgtactgcaattgcgtcaacaattgttgc 83
           |||||||||||||||||||||||||||||||||| || ||| | |   | ||||||||||
Sbjct: 4   gatttatgttcgcaggagagatggcactaattgtgctacaactac--aagcaattgttgc 61

                                     
Query: 84  catctctcctgtgaccaaaaatctct 109
           ||||| ||| ||||||||||| ||||
Sbjct: 62  catctttcccgtgaccaaaaagctct 87


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.