(131 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR390b_MI0023074_103                                             204   5e-54
mdm-MIR390f_MI0023078_103                                             163   2e-41
mdm-MIR390e_MI0023077_103                                             163   2e-41
ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132         74   1e-14
ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124         74   1e-14
csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154              72   4e-14
mdm-MIR390c_MI0023075_128                                              68   7e-13
mdm-MIR390d_MI0023076_128                                              68   7e-13
ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114         66   3e-12
ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119        66   3e-12
vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140               66   3e-12
mdm-MIR390a_MI0023073_125                                              64   1e-11
tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120            62   4e-11
aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129         62   4e-11
ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106        62   4e-11
ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106        62   4e-11
ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107       62   4e-11
bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105             62   4e-11
gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90                 60   2e-10
gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105                60   2e-10
ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123        60   2e-10
bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128             60   2e-10
tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129            58   7e-10
mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100          56   3e-09
cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134                 56   3e-09
ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137      54   1e-08
rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122           54   1e-08
aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127         52   4e-08
ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120       52   4e-08
rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108           52   4e-08
bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144             52   4e-08
gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103                48   6e-07
zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192                   42   4e-05
osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91                  42   4e-05
zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181                   42   4e-05
bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-loop_186    42   4e-05
ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175      42   4e-05
bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209      42   4e-05
sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179              42   4e-05
ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135      40   2e-04

>mdm-MIR390b_MI0023074_103
          Length = 103

 Score =  204 bits (103), Expect = 5e-54
 Identities = 103/103 (100%)
 Strand = Plus / Plus

                                                                       
Query: 16  gtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaaccac 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaaccac 60

                                                      
Query: 76  atatagcgctatccatcctgagtttcatggcttcttcttacac 118
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atatagcgctatccatcctgagtttcatggcttcttcttacac 103


>mdm-MIR390f_MI0023078_103
          Length = 103

 Score =  163 bits (82), Expect = 2e-41
 Identities = 97/102 (95%)
 Strand = Plus / Plus

                                                                       
Query: 15  agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 60

                                                     
Query: 75  catatagcgctatccatcctgagtttcatggcttcttcttac 116
           | ||| |||||||||||| || | ||||||||||||||||||
Sbjct: 61  cgtatcgcgctatccatcttgggcttcatggcttcttcttac 102


>mdm-MIR390e_MI0023077_103
          Length = 103

 Score =  163 bits (82), Expect = 2e-41
 Identities = 97/102 (95%)
 Strand = Plus / Plus

                                                                       
Query: 15  agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtgtggaagaatctgttaagctcaggagggatagcgccattctcggtttggtttaacca 60

                                                     
Query: 75  catatagcgctatccatcctgagtttcatggcttcttcttac 116
           | ||| |||||||||||| || | ||||||||||||||||||
Sbjct: 61  cgtatcgcgctatccatcttgggcttcatggcttcttcttac 102


>ghr-MIR390b_MI0005648_Gossypium_hirsutum_miR390b_stem-loop_132
          Length = 132

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 19 tggaagaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||||||
Sbjct: 4  tggaagaatctgttaagctcaggagggatagcgccat 40



 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 75  catatagcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||||||||||||| | ||||||||
Sbjct: 88  catatagcgctatccatcctgagtttcatcggttcttctt 127


>ghr-MIR390a_MI0005647_Gossypium_hirsutum_miR390a_stem-loop_124
          Length = 124

 Score = 73.8 bits (37), Expect = 1e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 19 tggaagaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  tggaagaatctgttaagctcaggagggatagcgccat 37



 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 75  catatagcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||||||||||||| | ||||||||
Sbjct: 85  catatagcgctatccatcctgagtttcatcggttcttctt 124


>csi-MIR390_MI0013317_Citrus_sinensis_miR390_stem-loop_154
          Length = 154

 Score = 71.9 bits (36), Expect = 4e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 81  gcgctatccatcctgagtttcatggcttcttcttac 116
           ||||||||||||||||||||||||||||||||||||
Sbjct: 98  gcgctatccatcctgagtttcatggcttcttcttac 133



 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 21 gaagaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||||
Sbjct: 9  gaagaatctgttaagctcaggagggatagcgccat 43


>mdm-MIR390c_MI0023075_128
          Length = 128

 Score = 67.9 bits (34), Expect = 7e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 83  gctatccatcctgagtttcatggcttcttcttac 116
           ||||||||||||||||||||||||||||||||||
Sbjct: 94  gctatccatcctgagtttcatggcttcttcttac 127



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 26 atctgttaagctcaggagggatagcgcca 54
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgtaaagctcaggagggatagcgcca 40


>mdm-MIR390d_MI0023076_128
          Length = 128

 Score = 67.9 bits (34), Expect = 7e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 83  gctatccatcctgagtttcatggcttcttcttac 116
           ||||||||||||||||||||||||||||||||||
Sbjct: 94  gctatccatcctgagtttcatggcttcttcttac 127



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 26 atctgttaagctcaggagggatagcgcca 54
          |||||| ||||||||||||||||||||||
Sbjct: 12 atctgtaaagctcaggagggatagcgcca 40


>ghr-MIR390c_MI0005649_Gossypium_hirsutum_miR390c_stem-loop_114
          Length = 114

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 23 agaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33



 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 75  catatagcgctatccatcctgagtttcat 103
           |||||||||||||||||||||||||||||
Sbjct: 81  catatagcgctatccatcctgagtttcat 109


>ptc-MIR390a_MI0002305_Populus_trichocarpa_miR390a_stem-loop_119
          Length = 119

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 23 agaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33


>vvi-MIR390_MI0006552_Vitis_vinifera_miR390_stem-loop_140
          Length = 140

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 23 agaatctgttaagctcaggagggatagcgccat 55
          |||||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgccat 33



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 81  gcgctatccatcctgagtttcatggcttcttc 112
           |||||||| ||||||||||||| || ||||||
Sbjct: 109 gcgctatctatcctgagtttcacgggttcttc 140


>mdm-MIR390a_MI0023073_125
          Length = 125

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 81  gcgctatccatcctgagtttcatggcttcttc 112
           ||||||||||||||||||||||||||||||||
Sbjct: 89  gcgctatccatcctgagtttcatggcttcttc 120



 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 23 agaatctgttaagctcaggagggatagcgccat 55
          ||||||||| |||||||||||||||||||||||
Sbjct: 9  agaatctgtaaagctcaggagggatagcgccat 41


>tcc-MIR390b_MI0017504_Theobroma_cacao_miR390b_stem-loop_120
          Length = 120

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                     
Query: 13 aaagtgtggaagaatctgttaagctcaggagggatagcgccat 55
          ||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 1  aaagtatgggagaatctgtaaagctcaggagggatagcgccat 43



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 81  gcgctatccatcctgagtttcatggcttcttc 112
           |||||||| |||||||||||||||| ||||||
Sbjct: 79  gcgctatctatcctgagtttcatgggttcttc 110


>aly-MIR390a_MI0014569_Arabidopsis_lyrata_miR390a_stem-loop_129
          Length = 129

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 21 gaagaatctgttaagctcaggagggatagcgccat 55
          ||||||||||| |||||||||||||||||||||||
Sbjct: 17 gaagaatctgtaaagctcaggagggatagcgccat 51



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 81  gcgctatccatcctgagtttcatggcttcttcttac 116
           ||||||||||||||||||||||| |  |||||||||
Sbjct: 80  gcgctatccatcctgagtttcattggctcttcttac 115


>ptc-MIR390d_MI0002308_Populus_trichocarpa_miR390d_stem-loop_106
          Length = 106

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 23 agaatctgttaagctcaggagggatagcgcc 53
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 81  gcgctatccatcctgagttt 100
           ||||||||||||||||||||
Sbjct: 79  gcgctatccatcctgagttt 98


>ptc-MIR390b_MI0002306_Populus_trichocarpa_miR390b_stem-loop_106
          Length = 106

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 23 agaatctgttaagctcaggagggatagcgcc 53
          |||||||||||||||||||||||||||||||
Sbjct: 1  agaatctgttaagctcaggagggatagcgcc 31



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 81  gcgctatccatcctgagtttcatggctt 108
           ||||||||||||||||||||||| ||||
Sbjct: 79  gcgctatccatcctgagtttcattgctt 106


>ath-MIR390a_MI0001000_Arabidopsis_thaliana_miR390a_stem-loop_107
          Length = 107

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 21 gaagaatctgttaagctcaggagggatagcgccat 55
          ||||||||||| |||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccat 40



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 81  gcgctatccatcctgagtttcatggcttcttcttac 116
           ||||||||||||||||||||||| |  |||||||||
Sbjct: 69  gcgctatccatcctgagtttcattggctcttcttac 104


>bna-MIR390b_MI0006448_Brassica_napus_miR390b_stem-loop_105
          Length = 105

 Score = 61.9 bits (31), Expect = 4e-11
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 21 gaagaatctgttaagctcaggagggatagcgccat 55
          ||||||||||| |||||||||||||||||||||||
Sbjct: 6  gaagaatctgtaaagctcaggagggatagcgccat 40



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 81  gcgctatccatcctgagtttcatggcttcttcttac 116
           ||||| ||||||||||||||||| |  |||||||||
Sbjct: 67  gcgctgtccatcctgagtttcattggctcttcttac 102


>gma-MIR390c_MI0017845_Glycine_max_miR390c_stem-loop_90
          Length = 90

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 81  gcgctatccatcctgagtttcatggcttct 110
           ||||||||||||||||||||||||||||||
Sbjct: 61  gcgctatccatcctgagtttcatggcttct 90



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 33 aagctcaggagggatagcgccat 55
          |||||||||||||||||||||||
Sbjct: 5  aagctcaggagggatagcgccat 27


>gma-MIR390a_MI0007214_Glycine_max_miR390a_stem-loop_105
          Length = 105

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 81  gcgctatccatcctgagtttcatggcttct 110
           ||||||||||||||||||||||||||||||
Sbjct: 67  gcgctatccatcctgagtttcatggcttct 96



 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 23 agaatctgttaagctcaggagggatagcgccat 55
          ||||||||| |||||||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagcgccat 33


>ptc-MIR390c_MI0002307_Populus_trichocarpa_miR390c_stem-loop_123
          Length = 123

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 26 atctgttaagctcaggagggatagcgccat 55
          ||||||||||||||||||||||||||||||
Sbjct: 4  atctgttaagctcaggagggatagcgccat 33


>bna-MIR390c_MI0006449_Brassica_napus_miR390c_stem-loop_128
          Length = 128

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 81  gcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||| ||||||||||||||
Sbjct: 85  gcgctatccatcctgagttccatggcttcttctt 118



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 28 ctgttaagctcaggagggatagcgccat 55
          |||| |||||||||||||||||||||||
Sbjct: 18 ctgtaaagctcaggagggatagcgccat 45


>tcc-MIR390a_MI0017503_Theobroma_cacao_miR390a_stem-loop_129
          Length = 129

 Score = 58.0 bits (29), Expect = 7e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 28 ctgttaagctcaggagggatagcgccatt 56
          |||||||||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccatt 44



 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 79  tagcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||||||||| | ||||||||
Sbjct: 86  tagcgctatccatcctgagtttcatcggttcttctt 121


>mtr-MIR390_MI0005586_Medicago_truncatula_miR390_stem-loop_100
          Length = 100

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 28 ctgttaagctcaggagggatagcgccat 55
          ||||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgccat 28



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 81  gcgctatccatcctgagtttcatgg 105
           |||||||||||||||||||||||||
Sbjct: 76  gcgctatccatcctgagtttcatgg 100


>cme-MIR390_MI0018164_Cucumis_melo_miR390_stem-loop_134
          Length = 134

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 19 tggaagaatctgttaagctcaggagggatagcgcca 54
          |||||||| |||| ||||||||||||||||||||||
Sbjct: 7  tggaagaacctgtaaagctcaggagggatagcgcca 42



 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 81  gcgctatccatcctgagtttcatggcttcttctt 114
           |||||||| |||||||||||||| ||||||||||
Sbjct: 95  gcgctatctatcctgagtttcatagcttcttctt 128


>ppt-MIR390a_MI0003494_Physcomitrella_patens_miR390a_stem-loop_137
          Length = 137

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 33 aagctcaggagggatagcgccattctc 59
          |||||||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccattctc 42


>rco-MIR390b_MI0013411_Ricinus_communis_miR390b_stem-loop_122
          Length = 122

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 77  tatagcgctatccatcctgagtttcat 103
           |||||||||||||||||||||||||||
Sbjct: 92  tatagcgctatccatcctgagtttcat 118



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 32 taagctcaggagggatagcgccat 55
          ||||||||||||||||||||||||
Sbjct: 5  taagctcaggagggatagcgccat 28


>aly-MIR390b_MI0014570_Arabidopsis_lyrata_miR390b_stem-loop_127
          Length = 127

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 81  gcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||| ||| ||||||||||
Sbjct: 91  gcgctatccatcctgagttccatagcttcttctt 124



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 33 aagctcaggagggatagcgccat 55
          |||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccat 41


>ath-MIR390b_MI0001001_Arabidopsis_thaliana_miR390b_stem-loop_120
          Length = 120

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 81  gcgctatccatcctgagtttcatggcttcttctt 114
           ||||||||||||||||||| ||| ||||||||||
Sbjct: 87  gcgctatccatcctgagttccatagcttcttctt 120



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 33 aagctcaggagggatagcgccat 55
          |||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37


>rco-MIR390a_MI0013410_Ricinus_communis_miR390a_stem-loop_108
          Length = 108

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 28 ctgttaagctcaggagggatagcgcc 53
          ||||||||||||||||||||||||||
Sbjct: 1  ctgttaagctcaggagggatagcgcc 26



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  gcgctatccatcctgagtttca 102
           ||||||||||||||||||||||
Sbjct: 82  gcgctatccatcctgagtttca 103


>bna-MIR390a_MI0006447_Brassica_napus_miR390a_stem-loop_144
          Length = 144

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 81  gcgctatccatcctgagtttcatggcttcttctt 114
           |||||||||||||||||||  |||||||||||||
Sbjct: 95  gcgctatccatcctgagttctatggcttcttctt 128



 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 28 ctgttaagctcaggagggatagcgccat 55
          |||| |||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccat 55


>gma-MIR390b_MI0007215_Glycine_max_miR390b_stem-loop_103
          Length = 103

 Score = 48.1 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 23 agaatctgttaagctcaggagggatagc 50
          ||||||||| ||||||||||||||||||
Sbjct: 1  agaatctgtaaagctcaggagggatagc 28


>zma-MIR390b_MI0013244_Zea_mays_miR390b_stem-loop_192
          Length = 192

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>osa-MIR390_MI0001690_Oryza_sativa_miR390_stem-loop_91
          Length = 91

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>zma-MIR390a_MI0013209_Zea_mays_miR390a_stem-loop_181
          Length = 181

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 2  aagctcaggagggatagcgcc 22


>bdi-MIR390b_MI0018217_Brachypodium_distachyon_miR390b_stem-
          loop_186
          Length = 186

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39


>ppt-MIR390b_MI0003495_Physcomitrella_patens_miR390b_stem-loop_175
          Length = 175

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48


>bdi-MIR390_MI0018085_Brachypodium_distachyon_miR390_stem-loop_209
          Length = 209

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51


>sbi-MIR390_MI0010887_Sorghum_bicolor_miR390_stem-loop_179
          Length = 179

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 33 aagctcaggagggatagcgcc 53
          |||||||||||||||||||||
Sbjct: 3  aagctcaggagggatagcgcc 23


>ppt-MIR390c_MI0004729_Physcomitrella_patens_miR390c_stem-loop_135
          Length = 135

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 34 agctcaggagggatagcgcc 53
          ||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.