(194 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR7120a_MI0023141_181                                            335   3e-93
mdm-MIR7120b_MI0023142_181                                            335   3e-93

>mdm-MIR7120a_MI0023141_181
          Length = 181

 Score =  335 bits (169), Expect = 3e-93
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   atgtatgtatatgtattaaaatgttcttttgccagccaatgtggcttgttatattgtcag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtatgtatatgtattaaaatgttcttttgccagccaatgtggcttgttatattgtcag 60

                                                                       
Query: 68  attgtcaatctgaacctttaattaccattaatttacgtaattaatggttcagattgacag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attgtcaatctgaacctttaattaccattaatttacgtaattaatggttcagattgacag 120

                                                            
Query: 128 tctgacaatataacgtgccaaactgtttggcaattgagcattttcatac 176
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgacaatataacgtgccaaactgtttggcaattgagcattttcatac 169



 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 78/88 (88%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 55  gttatattgtcagattgtcaatctgaacctttaattaccattaatttacg-taattaatg 113
           |||||||||||||| |||||||||||||| ||||||||  | |||| | | ||||||| |
Sbjct: 134 gttatattgtcagactgtcaatctgaaccattaattacg-taaattaatggtaattaaag 76

                                       
Query: 114 gttcagattgacagtctgacaatataac 141
           ||||||||||||| ||||||||||||||
Sbjct: 75  gttcagattgacaatctgacaatataac 48


>mdm-MIR7120b_MI0023142_181
          Length = 181

 Score =  335 bits (169), Expect = 3e-93
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   atgtatgtatatgtattaaaatgttcttttgccagccaatgtggcttgttatattgtcag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtatgtatatgtattaaaatgttcttttgccagccaatgtggcttgttatattgtcag 60

                                                                       
Query: 68  attgtcaatctgaacctttaattaccattaatttacgtaattaatggttcagattgacag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attgtcaatctgaacctttaattaccattaatttacgtaattaatggttcagattgacag 120

                                                            
Query: 128 tctgacaatataacgtgccaaactgtttggcaattgagcattttcatac 176
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctgacaatataacgtgccaaactgtttggcaattgagcattttcatac 169



 Score = 79.8 bits (40), Expect = 3e-16
 Identities = 78/88 (88%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                       
Query: 55  gttatattgtcagattgtcaatctgaacctttaattaccattaatttacg-taattaatg 113
           |||||||||||||| |||||||||||||| ||||||||  | |||| | | ||||||| |
Sbjct: 134 gttatattgtcagactgtcaatctgaaccattaattacg-taaattaatggtaattaaag 76

                                       
Query: 114 gttcagattgacagtctgacaatataac 141
           ||||||||||||| ||||||||||||||
Sbjct: 75  gttcagattgacaatctgacaatataac 48


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.