(131 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR168b_MI0023037_192                                             254   4e-69
cme-MIR168_MI0018177_Cucumis_melo_miR168_stem-loop_210                 79   4e-16
mdm-MIR168a_MI0023036_143                                              79   4e-16
vun-MIR168_MI0019571_Vigna_unguiculata_miR168_stem-loop_125            73   3e-14
gma-MIR168_MI0001779_Glycine_max_miR168_stem-loop_125                  73   3e-14
tcc-MIR168_MI0017474_Theobroma_cacao_miR168_stem-loop_167              73   3e-14
crt-MIR168_MI0013312_Citrus_reticulata_miR168_stem-loop_201            71   1e-13
mtr-MIR168c_MI0019093_Medicago_truncatula_miR168c_stem-loop_126        71   1e-13
ccl-MIR168_MI0013299_Citrus_clementine_miR168_stem-loop_176            71   1e-13
gma-MIR168b_MI0017835_Glycine_max_miR168b_stem-loop_110                71   1e-13
aau-MIR168_MI0018985_Acacia_auriculiformis_miR168_stem-loop_127        69   4e-13
vvi-MIR168_MI0006520_Vitis_vinifera_miR168_stem-loop_132               69   4e-13
ptc-MIR168b_MI0002244_Populus_trichocarpa_miR168b_stem-loop_136        65   7e-12
ptc-MIR168a_MI0002243_Populus_trichocarpa_miR168a_stem-loop_160        57   2e-09
rco-MIR168_MI0013394_Ricinus_communis_miR168_stem-loop_131             55   7e-09
aly-MIR168a_MI0014543_Arabidopsis_lyrata_miR168a_stem-loop_155         55   7e-09
ath-MIR168a_MI0000210_Arabidopsis_thaliana_miR168a_stem-loop_138       55   7e-09
ath-MIR168b_MI0000211_Arabidopsis_thaliana_miR168b_stem-loop_124       55   7e-09
aly-MIR168b_MI0014544_Arabidopsis_lyrata_miR168b_stem-loop_176         55   7e-09
mtr-MIR168b_MI0018373_Medicago_truncatula_miR168b_stem-loop_98         53   3e-08
zma-MIR168b_MI0001825_Zea_mays_miR168b_stem-loop_104                   53   3e-08
bna-MIR168_MI0006470_Brassica_napus_miR168_stem-loop_133               47   2e-06
sof-MIR168a_MI0001763_Saccharum_officinarum_miR168a_stem-loop_104      45   7e-06
sof-MIR168b_MI0001764_Saccharum_officinarum_miR168b_stem-loop_103      45   7e-06
ssp-MIR168a_MI0018194_Saccharum_ssp._miR168a_stem-loop_99              45   7e-06
zma-MIR168a_MI0001824_Zea_mays_miR168a_stem-loop_104                   45   7e-06
hvu-MIR168_MI0016457_Hordeum_vulgare_miR168_stem-loop_106              43   3e-05
bdi-MIR168_MI0018098_Brachypodium_distachyon_miR168_stem-loop_136      43   3e-05
osa-MIR168a_MI0001115_Oryza_sativa_miR168a_stem-loop_87                43   3e-05

>mdm-MIR168b_MI0023037_192
          Length = 192

 Score =  254 bits (127), Expect = 4e-69
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggcggtctctaattcgcttggtgcaggtcgggaaccgcttcgycccgtttgagccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31  cctggcggtctctaattcgcttggtgcaggtcgggaaccgcttcgycccgtttgagccta 90

                                                                       
Query: 61  taaaccagctggctcgaggctgcggggcgaaacggrtcccgccttgcatcaactgaatcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  taaaccagctggctcgaggctgcggggcgaaacggrtcccgccttgcatcaactgaatcg 150

                      
Query: 121 gagaccgcggt 131
           |||||||||||
Sbjct: 151 gagaccgcggt 161


>cme-MIR168_MI0018177_Cucumis_melo_miR168_stem-loop_210
          Length = 210

 Score = 78.6 bits (39), Expect = 4e-16
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 7  ggtctctaattcgcttggtgcaggtcgggaaccgcttcg 45
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccgcttcg 39



 Score = 58.6 bits (29), Expect = 4e-10
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 85  gggcgaaacggrtcccgccttgcatcaactgaatcggagaccg 127
           |||||||  || |||||||||||||||||||||||||| ||||
Sbjct: 168 gggcgaattggatcccgccttgcatcaactgaatcggaaaccg 210


>mdm-MIR168a_MI0023036_143
          Length = 143

 Score = 78.6 bits (39), Expect = 4e-16
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 5  gcggtctctaattcgcttggtgcaggtcgggaaccgctt 43
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcggtctctaattcgcttggtgcaggtcgggaaccgctt 39



 Score = 68.6 bits (34), Expect = 4e-13
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 85  gggcgaaacggrtcccgccttgcatcaactgaatcggagaccgc 128
           |||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 100 gggcaaaacaggtcccgccttgcatcaactgaatcggagaccgc 143


>vun-MIR168_MI0019571_Vigna_unguiculata_miR168_stem-loop_125
          Length = 125

 Score = 72.6 bits (36), Expect = 3e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 5  gcggtctctaattcgcttggtgcaggtcgggaaccg 40
          ||||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 58.6 bits (29), Expect = 4e-10
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccgc 128
           || ||||||||||||||||||||||||||| ||||
Sbjct: 84  ggatcccgccttgcatcaactgaatcggaggccgc 118


>gma-MIR168_MI0001779_Glycine_max_miR168_stem-loop_125
          Length = 125

 Score = 72.6 bits (36), Expect = 3e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 5  gcggtctctaattcgcttggtgcaggtcgggaaccg 40
          ||||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 64.6 bits (32), Expect = 7e-12
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccgcggt 131
           || ||||||||||||||||||||||||||| |||||||
Sbjct: 84  ggatcccgccttgcatcaactgaatcggaggccgcggt 121


>tcc-MIR168_MI0017474_Theobroma_cacao_miR168_stem-loop_167
          Length = 167

 Score = 72.6 bits (36), Expect = 3e-14
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccgcggt 131
           || |||||||||||||||||||||||||||||||||||
Sbjct: 123 ggatcccgccttgcatcaactgaatcggagaccgcggt 160



 Score = 70.6 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          |||||||||||||||||||||||||||||||||||
Sbjct: 8  ggcggtctctaattcgcttggtgcaggtcgggaac 42


>crt-MIR168_MI0013312_Citrus_reticulata_miR168_stem-loop_201
          Length = 201

 Score = 70.6 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          |||||||||||||||||||||||||||||||||||
Sbjct: 8  ggcggtctctaattcgcttggtgcaggtcgggaac 42



 Score = 64.6 bits (32), Expect = 7e-12
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccg 127
           || |||||||||||||||||||||||||||||||
Sbjct: 139 ggatcccgccttgcatcaactgaatcggagaccg 172


>mtr-MIR168c_MI0019093_Medicago_truncatula_miR168c_stem-loop_126
          Length = 126

 Score = 70.6 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 5  gcggtctctaattcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||||||||||||
Sbjct: 9  gcggtctctaattcgcttggtgcaggtcgggaacc 43



 Score = 64.6 bits (32), Expect = 7e-12
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccgcggt 131
           || ||||||||||||||||||||||||||| |||||||
Sbjct: 82  ggatcccgccttgcatcaactgaatcggaggccgcggt 119


>ccl-MIR168_MI0013299_Citrus_clementine_miR168_stem-loop_176
          Length = 176

 Score = 70.6 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          |||||||||||||||||||||||||||||||||||
Sbjct: 7  ggcggtctctaattcgcttggtgcaggtcgggaac 41



 Score = 64.6 bits (32), Expect = 7e-12
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 94  ggrtcccgccttgcatcaactgaatcggagaccg 127
           || |||||||||||||||||||||||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggagaccg 171


>gma-MIR168b_MI0017835_Glycine_max_miR168b_stem-loop_110
          Length = 110

 Score = 70.6 bits (35), Expect = 1e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 6  cggtctctaattcgcttggtgcaggtcgggaaccg 40
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  cggtctctaattcgcttggtgcaggtcgggaaccg 35



 Score = 56.6 bits (28), Expect = 2e-09
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 94  ggrtcccgccttgcatcaactgaatcggag 123
           || |||||||||||||||||||||||||||
Sbjct: 77  ggatcccgccttgcatcaactgaatcggag 106


>aau-MIR168_MI0018985_Acacia_auriculiformis_miR168_stem-loop_127
          Length = 127

 Score = 68.6 bits (34), Expect = 4e-13
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 7   ggtctctaattcgcttggtgcaggtcgggaaccg 40
           ||||||||||||||||||||||||||||||||||
Sbjct: 127 ggtctctaattcgcttggtgcaggtcgggaaccg 94



 Score = 58.6 bits (29), Expect = 4e-10
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 93  cggrtcccgccttgcatcaactgaatcggag 123
           ||| |||||||||||||||||||||||||||
Sbjct: 31  cggatcccgccttgcatcaactgaatcggag 1


>vvi-MIR168_MI0006520_Vitis_vinifera_miR168_stem-loop_132
          Length = 132

 Score = 68.6 bits (34), Expect = 4e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 7  ggtctctaattcgcttggtgcaggtcgggaaccg 40
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccg 34



 Score = 58.6 bits (29), Expect = 4e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 97  tcccgccttgcatcaactgaatcggagac 125
           |||||||||||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactgaatcggagac 129


>ptc-MIR168b_MI0002244_Populus_trichocarpa_miR168b_stem-loop_136
          Length = 136

 Score = 64.6 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 7  ggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 58.6 bits (29), Expect = 4e-10
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 94  ggrtcccgccttgcatcaactgaatcggaga 124
           || ||||||||||||||||||||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggaga 136


>ptc-MIR168a_MI0002243_Populus_trichocarpa_miR168a_stem-loop_160
          Length = 160

 Score = 56.6 bits (28), Expect = 2e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 7  ggtctctaattcgcttggtgcaggtcgggaac 38
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaac 32



 Score = 56.6 bits (28), Expect = 2e-09
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 94  ggrtcccgccttgcatcaactgaatcggag 123
           || |||||||||||||||||||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159


>rco-MIR168_MI0013394_Ricinus_communis_miR168_stem-loop_131
          Length = 131

 Score = 54.6 bits (27), Expect = 7e-09
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 12 ctaattcgcttggtgcaggtcgggaac 38
          |||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaac 27



 Score = 50.6 bits (25), Expect = 1e-07
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 94  ggrtcccgccttgcatcaactgaatcg 120
           || ||||||||||||||||||||||||
Sbjct: 102 ggatcccgccttgcatcaactgaatcg 128


>aly-MIR168a_MI0014543_Arabidopsis_lyrata_miR168a_stem-loop_155
          Length = 155

 Score = 54.6 bits (27), Expect = 7e-09
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 94  ggrtcccgccttgcatcaactgaatcgga 122
           || ||||||||||||||||||||||||||
Sbjct: 105 ggatcccgccttgcatcaactgaatcgga 133



 Score = 50.6 bits (25), Expect = 1e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaacc 46


>ath-MIR168a_MI0000210_Arabidopsis_thaliana_miR168a_stem-loop_138
          Length = 138

 Score = 54.6 bits (27), Expect = 7e-09
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 94  ggrtcccgccttgcatcaactgaatcgga 122
           || ||||||||||||||||||||||||||
Sbjct: 99  ggatcccgccttgcatcaactgaatcgga 127



 Score = 50.6 bits (25), Expect = 1e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 15 attcgcttggtgcaggtcgggaacc 39
          |||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40


>ath-MIR168b_MI0000211_Arabidopsis_thaliana_miR168b_stem-loop_124
          Length = 124

 Score = 54.6 bits (27), Expect = 7e-09
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          |||||||||  ||||||||||||||||||||||||
Sbjct: 6  ggcggtctcggattcgcttggtgcaggtcgggaac 40



 Score = 38.5 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  tcccgccttgcatcaactgaatcggag 123
           ||||| |||| ||||||||||||||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggag 114


>aly-MIR168b_MI0014544_Arabidopsis_lyrata_miR168b_stem-loop_176
          Length = 176

 Score = 54.6 bits (27), Expect = 7e-09
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          |||||||||  ||||||||||||||||||||||||
Sbjct: 30 ggcggtctcggattcgcttggtgcaggtcgggaac 64



 Score = 38.5 bits (19), Expect = 5e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 97  tcccgccttgcatcaactgaatcggag 123
           ||||| |||| ||||||||||||||||
Sbjct: 112 tcccgtcttgtatcaactgaatcggag 138


>mtr-MIR168b_MI0018373_Medicago_truncatula_miR168b_stem-loop_98
          Length = 98

 Score = 52.6 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ctctaattcgcttggtgcaggtcgggaacc 39
          |||| |||||||||||||||||||||||||
Sbjct: 4  ctctgattcgcttggtgcaggtcgggaacc 33


>zma-MIR168b_MI0001825_Zea_mays_miR168b_stem-loop_104
          Length = 104

 Score = 52.6 bits (26), Expect = 3e-08
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 92  acggrtcccgccttgcatcaactgaatcggag 123
           |||| |||||||||||||||| ||||||||||
Sbjct: 61  acggatcccgccttgcatcaagtgaatcggag 92


>bna-MIR168_MI0006470_Brassica_napus_miR168_stem-loop_133
          Length = 133

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 4  ggcggtctctaattcgcttggtgcaggtcgggaac 38
          ||||| |||| | ||||||||||||||||||||||
Sbjct: 5  ggcggcctctgactcgcttggtgcaggtcgggaac 39


>sof-MIR168a_MI0001763_Saccharum_officinarum_miR168a_stem-loop_104
          Length = 104

 Score = 44.5 bits (22), Expect = 7e-06
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 92  acggrtcccgccttgcatcaactgaatcggag 123
           |||| |||||||||||| ||| ||||||||||
Sbjct: 61  acggatcccgccttgcaccaagtgaatcggag 92


>sof-MIR168b_MI0001764_Saccharum_officinarum_miR168b_stem-loop_103
          Length = 103

 Score = 44.5 bits (22), Expect = 7e-06
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 92  acggrtcccgccttgcatcaactgaatcggag 123
           |||| |||||||||||| ||| ||||||||||
Sbjct: 60  acggatcccgccttgcaccaagtgaatcggag 91


>ssp-MIR168a_MI0018194_Saccharum_ssp._miR168a_stem-loop_99
          Length = 99

 Score = 44.5 bits (22), Expect = 7e-06
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 92  acggrtcccgccttgcatcaactgaatcggag 123
           |||| |||||||||||| ||| ||||||||||
Sbjct: 58  acggatcccgccttgcaccaagtgaatcggag 89


>zma-MIR168a_MI0001824_Zea_mays_miR168a_stem-loop_104
          Length = 104

 Score = 44.5 bits (22), Expect = 7e-06
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 92  acggrtcccgccttgcatcaactgaatcggag 123
           |||| |||||||||||| ||| ||||||||||
Sbjct: 61  acggatcccgccttgcaccaagtgaatcggag 92


>hvu-MIR168_MI0016457_Hordeum_vulgare_miR168_stem-loop_106
          Length = 106

 Score = 42.5 bits (21), Expect = 3e-05
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 93  cggrtcccgccttgcatcaactgaatcggag 123
           ||| |||||||||||| ||| ||||||||||
Sbjct: 65  cggatcccgccttgcaccaagtgaatcggag 95


>bdi-MIR168_MI0018098_Brachypodium_distachyon_miR168_stem-loop_136
          Length = 136

 Score = 42.5 bits (21), Expect = 3e-05
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 93  cggrtcccgccttgcatcaactgaatcggag 123
           ||| |||||||||||| ||| ||||||||||
Sbjct: 74  cggatcccgccttgcaccaagtgaatcggag 104


>osa-MIR168a_MI0001115_Oryza_sativa_miR168a_stem-loop_87
          Length = 87

 Score = 42.5 bits (21), Expect = 3e-05
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                          
Query: 93  cggrtcccgccttgcatcaactgaatcggag 123
           ||| |||||||||||| ||| ||||||||||
Sbjct: 54  cggatcccgccttgcaccaagtgaatcggag 84


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.