(170 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR168a_MI0023036_143                                             283   8e-78
mdm-MIR168b_MI0023037_192                                              94   2e-20
crt-MIR168_MI0013312_Citrus_reticulata_miR168_stem-loop_201            76   4e-15
tcc-MIR168_MI0017474_Theobroma_cacao_miR168_stem-loop_167              76   4e-15
ccl-MIR168_MI0013299_Citrus_clementine_miR168_stem-loop_176            74   2e-14
cme-MIR168_MI0018177_Cucumis_melo_miR168_stem-loop_210                 74   2e-14
vun-MIR168_MI0019571_Vigna_unguiculata_miR168_stem-loop_125            72   6e-14
gma-MIR168_MI0001779_Glycine_max_miR168_stem-loop_125                  72   6e-14
mtr-MIR168c_MI0019093_Medicago_truncatula_miR168c_stem-loop_126        70   2e-13
gma-MIR168b_MI0017835_Glycine_max_miR168b_stem-loop_110                70   2e-13
aau-MIR168_MI0018985_Acacia_auriculiformis_miR168_stem-loop_127        68   9e-13
vvi-MIR168_MI0006520_Vitis_vinifera_miR168_stem-loop_132               68   9e-13
ptc-MIR168b_MI0002244_Populus_trichocarpa_miR168b_stem-loop_136        64   1e-11
aly-MIR168b_MI0014544_Arabidopsis_lyrata_miR168b_stem-loop_176         60   2e-10
ptc-MIR168a_MI0002243_Populus_trichocarpa_miR168a_stem-loop_160        56   4e-09
ath-MIR168b_MI0000211_Arabidopsis_thaliana_miR168b_stem-loop_124       56   4e-09
rco-MIR168_MI0013394_Ricinus_communis_miR168_stem-loop_131             54   1e-08
mtr-MIR168b_MI0018373_Medicago_truncatula_miR168b_stem-loop_98         52   6e-08
aly-MIR168a_MI0014543_Arabidopsis_lyrata_miR168a_stem-loop_155         52   6e-08
ath-MIR168a_MI0000210_Arabidopsis_thaliana_miR168a_stem-loop_138       52   6e-08
zma-MIR168b_MI0001825_Zea_mays_miR168b_stem-loop_104                   46   3e-06
bna-MIR168_MI0006470_Brassica_napus_miR168_stem-loop_133               46   3e-06
sof-MIR168a_MI0001763_Saccharum_officinarum_miR168a_stem-loop_104      38   8e-04
hvu-MIR168_MI0016457_Hordeum_vulgare_miR168_stem-loop_106              38   8e-04
sof-MIR168b_MI0001764_Saccharum_officinarum_miR168b_stem-loop_103      38   8e-04
ssp-MIR168a_MI0018194_Saccharum_ssp._miR168a_stem-loop_99              38   8e-04
bdi-MIR168_MI0018098_Brachypodium_distachyon_miR168_stem-loop_136      38   8e-04
osa-MIR168a_MI0001115_Oryza_sativa_miR168a_stem-loop_87                38   8e-04
zma-MIR168a_MI0001824_Zea_mays_miR168a_stem-loop_104                   38   8e-04

>mdm-MIR168a_MI0023036_143
          Length = 143

 Score =  283 bits (143), Expect = 8e-78
 Identities = 143/143 (100%)
 Strand = Plus / Plus

                                                                       
Query: 15  gcggtctctaattcgcttggtgcaggtcgggaaccgctttgccctactttaccgtgtctg 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcggtctctaattcgcttggtgcaggtcgggaaccgctttgccctactttaccgtgtctg 60

                                                                       
Query: 75  ggcctatgagctaggtggctcgatgtgtaatcggccacagggcaaaacaggtcccgcctt 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggcctatgagctaggtggctcgatgtgtaatcggccacagggcaaaacaggtcccgcctt 120

                                  
Query: 135 gcatcaactgaatcggagaccgc 157
           |||||||||||||||||||||||
Sbjct: 121 gcatcaactgaatcggagaccgc 143


>mdm-MIR168b_MI0023037_192
          Length = 192

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 114 gggcaaaacaggtcccgccttgcatcaactgaatcggagaccgcggtgaaggcggtt 170
           |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gggcgaaacggrtcccgccttgcatcaactgaatcggagaccgcggtgaaggcggtt 171



 Score = 89.7 bits (45), Expect = 3e-19
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                               
Query: 1  tgattcagttactggcggtctctaattcgcttggtgcaggtcgggaaccgctt 53
          ||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tgattcatttcctggcggtctctaattcgcttggtgcaggtcgggaaccgctt 73


>crt-MIR168_MI0013312_Citrus_reticulata_miR168_stem-loop_201
          Length = 201

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 7  agttactggcggtctctaattcgcttggtgcaggtcgggaac 48
          |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1  agttaccggcggtctctaattcgcttggtgcaggtcgggaac 42



 Score = 65.9 bits (33), Expect = 4e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 142 tcccgccttgcatcaactgaatcggagaccgaggtga 178


>tcc-MIR168_MI0017474_Theobroma_cacao_miR168_stem-loop_167
          Length = 167

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                    
Query: 7  agttactggcggtctctaattcgcttggtgcaggtcgggaac 48
          |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1  agttaccggcggtctctaattcgcttggtgcaggtcgggaac 42



 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162
           |||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162


>ccl-MIR168_MI0013299_Citrus_clementine_miR168_stem-loop_176
          Length = 176

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  gttactggcggtctctaattcgcttggtgcaggtcgggaac 48
          ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1  gttaccggcggtctctaattcgcttggtgcaggtcgggaac 41



 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtg 161
           ||||||||||||||||||||||||||||||| ||||
Sbjct: 141 tcccgccttgcatcaactgaatcggagaccgaggtg 176


>cme-MIR168_MI0018177_Cucumis_melo_miR168_stem-loop_210
          Length = 210

 Score = 73.8 bits (37), Expect = 2e-14
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 17 ggtctctaattcgcttggtgcaggtcgggaaccgctt 53
          |||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccgctt 37



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 126 tcccgccttgcatcaactgaatcggagaccg 156
           |||||||||||||||||||||||||| ||||
Sbjct: 180 tcccgccttgcatcaactgaatcggaaaccg 210


>vun-MIR168_MI0019571_Vigna_unguiculata_miR168_stem-loop_125
          Length = 125

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 gcggtctctaattcgcttggtgcaggtcgggaaccg 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162
           ||||||||||||||||||||||||||| |||| ||||
Sbjct: 87  tcccgccttgcatcaactgaatcggaggccgcagtga 123


>gma-MIR168_MI0001779_Glycine_max_miR168_stem-loop_125
          Length = 125

 Score = 71.9 bits (36), Expect = 6e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                              
Query: 15 gcggtctctaattcgcttggtgcaggtcgggaaccg 50
          ||||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtgaa 163
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 87  tcccgccttgcatcaactgaatcggaggccgcggtgaa 124


>mtr-MIR168c_MI0019093_Medicago_truncatula_miR168c_stem-loop_126
          Length = 126

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 15 gcggtctctaattcgcttggtgcaggtcgggaacc 49
          |||||||||||||||||||||||||||||||||||
Sbjct: 9  gcggtctctaattcgcttggtgcaggtcgggaacc 43



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtgaa 163
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 85  tcccgccttgcatcaactgaatcggaggccgcggtgaa 122


>gma-MIR168b_MI0017835_Glycine_max_miR168b_stem-loop_110
          Length = 110

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 16 cggtctctaattcgcttggtgcaggtcgggaaccg 50
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  cggtctctaattcgcttggtgcaggtcgggaaccg 35



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||||||||||||||||||
Sbjct: 80  tcccgccttgcatcaactgaatcggag 106


>aau-MIR168_MI0018985_Acacia_auriculiformis_miR168_stem-loop_127
          Length = 127

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 17  ggtctctaattcgcttggtgcaggtcgggaaccg 50
           ||||||||||||||||||||||||||||||||||
Sbjct: 127 ggtctctaattcgcttggtgcaggtcgggaaccg 94



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||||||||||||||||||
Sbjct: 27  tcccgccttgcatcaactgaatcggag 1


>vvi-MIR168_MI0006520_Vitis_vinifera_miR168_stem-loop_132
          Length = 132

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 17 ggtctctaattcgcttggtgcaggtcgggaaccg 50
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaaccg 34



 Score = 58.0 bits (29), Expect = 9e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 126 tcccgccttgcatcaactgaatcggagac 154
           |||||||||||||||||||||||||||||
Sbjct: 101 tcccgccttgcatcaactgaatcggagac 129


>ptc-MIR168b_MI0002244_Populus_trichocarpa_miR168b_stem-loop_136
          Length = 136

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 17 ggtctctaattcgcttggtgcaggtcgggaac 48
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtctctaattcgcttggtgcaggtcgggaac 32



 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 126 tcccgccttgcatcaactgaatcggaga 153
           ||||||||||||||||||||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggaga 136


>aly-MIR168b_MI0014544_Arabidopsis_lyrata_miR168b_stem-loop_176
          Length = 176

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 7  agttactggcggtctctaattcgcttggtgcaggtcgggaac 48
          |||||| |||||||||  ||||||||||||||||||||||||
Sbjct: 23 agttaccggcggtctcggattcgcttggtgcaggtcgggaac 64



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtgaa 163
           ||||| |||| |||||||||||||||| ||| ||||||
Sbjct: 112 tcccgtcttgtatcaactgaatcggagtccgaggtgaa 149


>ptc-MIR168a_MI0002243_Populus_trichocarpa_miR168a_stem-loop_160
          Length = 160

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 17 ggtctctaattcgcttggtgcaggtcgggaac 48
          ||||||| ||||||||||||||||||||||||
Sbjct: 1  ggtctctgattcgcttggtgcaggtcgggaac 32



 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||||||||||||||||||
Sbjct: 133 tcccgccttgcatcaactgaatcggag 159


>ath-MIR168b_MI0000211_Arabidopsis_thaliana_miR168b_stem-loop_124
          Length = 124

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 9  ttactggcggtctctaattcgcttggtgcaggtcgggaac 48
          |||| |||||||||  ||||||||||||||||||||||||
Sbjct: 1  ttaccggcggtctcggattcgcttggtgcaggtcgggaac 40



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 126 tcccgccttgcatcaactgaatcggagaccgcggtga 162
           ||||| |||| |||||||||||||||| ||| |||||
Sbjct: 88  tcccgtcttgtatcaactgaatcggagtccgaggtga 124


>rco-MIR168_MI0013394_Ricinus_communis_miR168_stem-loop_131
          Length = 131

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 22 ctaattcgcttggtgcaggtcgggaac 48
          |||||||||||||||||||||||||||
Sbjct: 1  ctaattcgcttggtgcaggtcgggaac 27



 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 126 tcccgccttgcatcaactgaatcg 149
           ||||||||||||||||||||||||
Sbjct: 105 tcccgccttgcatcaactgaatcg 128


>mtr-MIR168b_MI0018373_Medicago_truncatula_miR168b_stem-loop_98
          Length = 98

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 20 ctctaattcgcttggtgcaggtcgggaacc 49
          |||| |||||||||||||||||||||||||
Sbjct: 4  ctctgattcgcttggtgcaggtcgggaacc 33


>aly-MIR168a_MI0014543_Arabidopsis_lyrata_miR168a_stem-loop_155
          Length = 155

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 126 tcccgccttgcatcaactgaatcgga 151
           ||||||||||||||||||||||||||
Sbjct: 108 tcccgccttgcatcaactgaatcgga 133



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 25 attcgcttggtgcaggtcgggaacc 49
          |||||||||||||||||||||||||
Sbjct: 22 attcgcttggtgcaggtcgggaacc 46


>ath-MIR168a_MI0000210_Arabidopsis_thaliana_miR168a_stem-loop_138
          Length = 138

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 126 tcccgccttgcatcaactgaatcgga 151
           ||||||||||||||||||||||||||
Sbjct: 102 tcccgccttgcatcaactgaatcgga 127



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 25 attcgcttggtgcaggtcgggaacc 49
          |||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaacc 40


>zma-MIR168b_MI0001825_Zea_mays_miR168b_stem-loop_104
          Length = 104

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||||||| ||||||||||
Sbjct: 66  tcccgccttgcatcaagtgaatcggag 92


>bna-MIR168_MI0006470_Brassica_napus_miR168_stem-loop_133
          Length = 133

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 14 ggcggtctctaattcgcttggtgcaggtcgggaac 48
          ||||| |||| | ||||||||||||||||||||||
Sbjct: 5  ggcggcctctgactcgcttggtgcaggtcgggaac 39


>sof-MIR168a_MI0001763_Saccharum_officinarum_miR168a_stem-loop_104
          Length = 104

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 66  tcccgccttgcaccaagtgaatcggag 92


>hvu-MIR168_MI0016457_Hordeum_vulgare_miR168_stem-loop_106
          Length = 106

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 69  tcccgccttgcaccaagtgaatcggag 95


>sof-MIR168b_MI0001764_Saccharum_officinarum_miR168b_stem-loop_103
          Length = 103

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 65  tcccgccttgcaccaagtgaatcggag 91


>ssp-MIR168a_MI0018194_Saccharum_ssp._miR168a_stem-loop_99
          Length = 99

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 63  tcccgccttgcaccaagtgaatcggag 89


>bdi-MIR168_MI0018098_Brachypodium_distachyon_miR168_stem-loop_136
          Length = 136

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 78  tcccgccttgcaccaagtgaatcggag 104


>osa-MIR168a_MI0001115_Oryza_sativa_miR168a_stem-loop_87
          Length = 87

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 58  tcccgccttgcaccaagtgaatcggag 84


>zma-MIR168a_MI0001824_Zea_mays_miR168a_stem-loop_104
          Length = 104

 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 126 tcccgccttgcatcaactgaatcggag 152
           |||||||||||| ||| ||||||||||
Sbjct: 66  tcccgccttgcaccaagtgaatcggag 92


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.