(158 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR396b_MI0023094_168                                             313   9e-87
mdm-MIR396a_MI0023093_149                                             256   2e-69
gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135                82   6e-17
gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140                80   2e-16
csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134            78   9e-16
bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128       76   4e-15
bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128       76   4e-15
amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145               76   4e-15
lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108              76   4e-15
aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146        72   5e-14
tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151            70   2e-13
ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151       68   9e-13
vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120             68   9e-13
ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132        66   3e-12
mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95         64   1e-11
aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172         64   1e-11
ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123        62   5e-11
ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136         62   5e-11
ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135         62   5e-11
sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128            56   3e-09
zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136                   56   3e-09
sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134        56   3e-09
zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124                   56   3e-09
csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153            54   1e-08
osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116               54   1e-08
zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114                   54   1e-08
bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-loop_152    54   1e-08
sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125            52   5e-08
aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122         52   5e-08
zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137                   52   5e-08
ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95                50   2e-07
osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154               50   2e-07
bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-loop_153    48   8e-07
ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89                46   3e-06
gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114                46   3e-06
vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108             46   3e-06
gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148                46   3e-06
pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100                44   1e-05
aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188         42   5e-05
tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146            42   5e-05
bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99        40   2e-04
csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178            40   2e-04
ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277            40   2e-04
tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146            40   2e-04
rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124             40   2e-04
bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-loop_201    40   2e-04
pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119                  40   2e-04
zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166                   40   2e-04
mdm-MIR396c_MI0023095_107                                              40   2e-04
aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89          40   2e-04
osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141               40   2e-04
mdm-MIR396d_MI0023096_103                                              40   2e-04
bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99        40   2e-04
ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145        40   2e-04
gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151                40   2e-04
bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117             40   2e-04
gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108                40   2e-04
mdm-MIR396f_MI0023098_153                                              40   2e-04
sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162            40   2e-04
ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154        40   2e-04
ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102        40   2e-04
mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93         40   2e-04
vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116             40   2e-04
gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151                40   2e-04
gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117                40   2e-04
mdm-MIR396e_MI0023097_107                                              40   2e-04
tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152            40   2e-04
gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126                40   2e-04
vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108             40   2e-04
ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135       40   2e-04
zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117                   40   2e-04

>mdm-MIR396b_MI0023094_168
          Length = 168

 Score =  313 bits (158), Expect = 9e-87
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatgatcctctttgtattcttccacagctttcttgaactgcatccatctatggcgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   atgatgatcctctttgtattcttccacagctttcttgaactgcatccatctatggcgaga 64

                                                                       
Query: 61  tcgaccgatctttggagtgagtcgactcagtatctctattccccttaacttggtttgcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tcgaccgatctttggagtgagtcgactcagtatctctattccccttaacttggtttgcgg 124

                                                 
Query: 121 ttcaataaagctgtgggaagatacagataggctcaata 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttcaataaagctgtgggaagatacagataggctcaata 162


>mdm-MIR396a_MI0023093_149
          Length = 149

 Score =  256 bits (129), Expect = 2e-69
 Identities = 144/149 (96%)
 Strand = Plus / Plus

                                                                       
Query: 6   gatcctctttgtattcttccacagctttcttgaactgcatccatctatggcgagatcgac 65
           ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct: 1   gatcctctttgtattcttccacagctttcttgaacagcatccatgtatgacgagatcgac 60

                                                                       
Query: 66  cgatctttggagtgagtcgactcagtatctctattccccttaacttggtttgcggttcaa 125
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 61  cgatctttggagtgagtcgactcagtctctctattcctcttaacttggtttgcggttcaa 120

                                        
Query: 126 taaagctgtgggaagatacagataggctc 154
           |||||||||||||||||||||||||||||
Sbjct: 121 taaagctgtgggaagatacagataggctc 149


>gma-MIR396i_MI0018680_Glycine_max_miR396i_stem-loop_135
          Length = 135

 Score = 81.8 bits (41), Expect = 6e-17
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                   
Query: 9  cctctttgtattcttccacagctttcttgaactgcatccat 49
          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5  cctctttgtattcttccacagctttcttgaactgcatccat 45



 Score = 77.8 bits (39), Expect = 9e-16
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 109 cttggtttgcggttcaataaagctgtgggaagatacagatagg 151
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 89  cttgttttgcggttcaataaagctgtgggaagatacagatagg 131


>gma-MIR396a_MI0001785_Glycine_max_miR396a_stem-loop_140
          Length = 140

 Score = 79.8 bits (40), Expect = 2e-16
 Identities = 46/48 (95%)
 Strand = Plus / Plus

                                                           
Query: 109 cttggtttgcggttcaataaagctgtgggaagatacagataggctcaa 156
           |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 92  cttgttttgcggttcaataaagctgtgggaagatacagatagggtcaa 139



 Score = 77.8 bits (39), Expect = 9e-16
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 10 ctctttgtattcttccacagctttcttgaactgcatcca 48
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 9  ctctttgtattcttccacagctttcttgaactgcatcca 47


>csi-MIR396b_MI0016707_Citrus_sinensis_miR396b_stem-loop_134
          Length = 134

 Score = 77.8 bits (39), Expect = 9e-16
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                     
Query: 4  atgatcctctttgtattcttccacagctttcttgaactgcatc 46
          ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2  atgatcctctttgtatttttccacagctttcttgaactgcatc 44



 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 115 ttgcggttcaataaagctgtgggaagatacagataggctcaata 158
           ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 82  ttgcggttcaataaagctgtgggaagatacaaacaggttcaata 125


>bgy-MIR396a_MI0016983_Bruguiera_gymnorhiza_miR396a_stem-loop_128
          Length = 128

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 9  cctctttgtattcttccacagctttcttgaactgcatc 46
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cctctttgtattcttccacagctttcttgaactgcatc 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 90  tttgcggttcaataaagctgtgggaagatacaga 123


>bcy-MIR396a_MI0016987_Bruguiera_cylindrica_miR396a_stem-loop_128
          Length = 128

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 9  cctctttgtattcttccacagctttcttgaactgcatc 46
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 2  cctctttgtattcttccacagctttcttgaactgcatc 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 90  tttgcggttcaataaagctgtgggaagatacaga 123


>amg-MIR396_MI0018987_Acacia_mangium_miR396_stem-loop_145
          Length = 145

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 115 ttgcggttcaataaagctgtgggaagatacagataggctcaa 156
           ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 100 ttgcggttcaataaagctgtgggaagatacagatagggtcaa 141



 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 ctctttgtattcttccacagctttcttgaactgcatc 46
          |||| ||||||||||||||||||||||||||||||||
Sbjct: 9  ctctctgtattcttccacagctttcttgaactgcatc 45


>lja-MIR396_MI0010581_Lotus_japonicus_miR396_stem-loop_108
          Length = 108

 Score = 75.8 bits (38), Expect = 4e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 8  tcctctttgtattcttccacagctttcttgaactgcat 45
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 2  tcctctttgtattcttccacagctttcttgaactgcat 39



 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 114 tttgcggttcaataaagctgtgggaagatacagatagg 151
           |||||||||||||||||||||||||||||| |||||||
Sbjct: 70  tttgcggttcaataaagctgtgggaagatatagatagg 107


>aau-MIR396_MI0018981_Acacia_auriculiformis_miR396_stem-loop_146
          Length = 146

 Score = 71.9 bits (36), Expect = 5e-14
 Identities = 39/40 (97%)
 Strand = Plus / Plus

                                                   
Query: 117 gcggttcaataaagctgtgggaagatacagataggctcaa 156
           ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 104 gcggttcaataaagctgtgggaagatacagatagggtcaa 143



 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 ctctttgtattcttccacagctttcttgaactgcatc 46
          |||| ||||||||||||||||||||||||||||||||
Sbjct: 11 ctctctgtattcttccacagctttcttgaactgcatc 47


>tcc-MIR396b_MI0017512_Theobroma_cacao_miR396b_stem-loop_151
          Length = 151

 Score = 69.9 bits (35), Expect = 2e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 9  cctctttgtattcttccacagctttcttgaactgc 43
          |||||||||||||||||||||||||||||||||||
Sbjct: 8  cctctttgtattcttccacagctttcttgaactgc 42



 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 115 ttgcggttcaataaagctgtgggaagatac 144
           |||| |||||||||||||||||||||||||
Sbjct: 108 ttgcagttcaataaagctgtgggaagatac 137


>ath-MIR396a_MI0001013_Arabidopsis_thaliana_miR396a_stem-loop_151
          Length = 151

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 114 tttgcggttcaataaagctgtgggaagatacaga 147
           ||||||||||||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagatacaga 150



 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 15 tgtattcttccacagctttcttgaactgca 44
          ||||||||||||||||||||||||||||||
Sbjct: 4  tgtattcttccacagctttcttgaactgca 33


>vvi-MIR396d_MI0006571_Vitis_vinifera_miR396d_stem-loop_120
          Length = 120

 Score = 67.9 bits (34), Expect = 9e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 12 ctttgtattcttccacagctttcttgaactgcat 45
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgcat 34



 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 115 ttgcggttcaataaagctgtgggaagatac 144
           ||||||||||||||||||||||||||||||
Sbjct: 85  ttgcggttcaataaagctgtgggaagatac 114


>ptc-MIR396b_MI0002326_Populus_trichocarpa_miR396b_stem-loop_132
          Length = 132

 Score = 65.9 bits (33), Expect = 3e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 12 ctttgtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||||||
Sbjct: 1  ctttgtattcttccacagctttcttgaactgca 33



 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 116 tgcggttcaataaagctgtgggaagataca 145
           ||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131


>mtr-MIR396b_MI0005622_Medicago_truncatula_miR396b_stem-loop_95
          Length = 95

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 17 tattcttccacagctttcttgaactgcatcca 48
          ||||||||||||||||||||||||||||||||
Sbjct: 1  tattcttccacagctttcttgaactgcatcca 32



 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 114 tttgcggttcaataaagctgtgggaagata 143
           ||||||||||||||||||||||||||||||
Sbjct: 66  tttgcggttcaataaagctgtgggaagata 95


>aly-MIR396a_MI0014581_Arabidopsis_lyrata_miR396a_stem-loop_172
          Length = 172

 Score = 63.9 bits (32), Expect = 1e-11
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                              
Query: 9  cctctttgtattcttccacagctttcttgaactgca 44
          ||||| ||||||||||||||||||||||||||||||
Sbjct: 11 cctctctgtattcttccacagctttcttgaactgca 46



 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 114 tttgcggttcaataaagctgtgggaagatac 144
           |||||||||||||||||||||||||||||||
Sbjct: 127 tttgcggttcaataaagctgtgggaagatac 157


>ptc-MIR396a_MI0002325_Populus_trichocarpa_miR396a_stem-loop_123
          Length = 123

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 92  ttgcggttcaataaagctgtgggaagataca 122



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33


>ghr-MIR396a_MI0005650_Gossypium_hirsutum_miR396a_stem-loop_136
          Length = 136

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33


>ghr-MIR396b_MI0005651_Gossypium_hirsutum_miR396b_stem-loop_135
          Length = 135

 Score = 61.9 bits (31), Expect = 5e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 115 ttgcggttcaataaagctgtgggaagataca 145
           |||||||||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132



 Score = 58.0 bits (29), Expect = 8e-10
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 16 gtattcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||||||
Sbjct: 5  gtattcttccacagctttcttgaactgca 33


>sbi-MIR396b_MI0001538_Sorghum_bicolor_miR396b_stem-loop_128
          Length = 128

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaactgcatc 46
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 91  gttcaataaagctgtgggaa 110


>zma-MIR396b_MI0001800_Zea_mays_miR396b_stem-loop_136
          Length = 136

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaactgcatc 46
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 99  gttcaataaagctgtgggaa 118


>sof-MIR396_MI0001755_Saccharum_officinarum_miR396_stem-loop_134
          Length = 134

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 11 tctttgtattcttccacagctttcttgaactgcatc 46
          |||||||  |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 97  gttcaataaagctgtgggaa 116


>zma-MIR396h_MI0013228_Zea_mays_miR396h_stem-loop_124
          Length = 124

 Score = 56.0 bits (28), Expect = 3e-09
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                               
Query: 11  tctttgtattcttccacagctttcttgaactgcatc 46
           |||||||  |||||||||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgcatc 74



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1


>csi-MIR396a_MI0016706_Citrus_sinensis_miR396a_stem-loop_153
          Length = 153

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 8  tcctctttgtattcttccacagctttcttgaactg 42
          ||||||||||  |||||||||||||||||||||||
Sbjct: 7  tcctctttgtgatcttccacagctttcttgaactg 41



 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 7   atcctctttgtattcttccacagctttcttgaa 39
           |||||||| ||| | ||||||||||||||||||
Sbjct: 122 atcctcttagtagttttccacagctttcttgaa 90


>osa-MIR396b_MI0001047_Oryza_sativa_miR396b_stem-loop_116
          Length = 116

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacagctttcttgaactgcatc 46
          |||||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgcatc 35



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107


>zma-MIR396g_MI0013227_Zea_mays_miR396g_stem-loop_114
          Length = 114

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 20  tcttccacagctttcttgaactgcatc 46
           |||||||||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcatc 87



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 20  gttcaataaagctgtgggaa 1


>bdi-MIR396d_MI0018096_Brachypodium_distachyon_miR396d_stem-
          loop_152
          Length = 152

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 20 tcttccacagctttcttgaactgcatc 46
          |||||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcatc 57



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 101 gttcaataaagctgtgggaa 120


>sbi-MIR396a_MI0001539_Sorghum_bicolor_miR396a_stem-loop_125
          Length = 125

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacagctttcttgaactgcat 45
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 88  gttcaataaagctgtgggaa 107


>aqc-MIR396a_MI0012094_Aquilegia_caerulea_miR396a_stem-loop_122
          Length = 122

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 114 tttgcggttcaataaagctgtgggaa 139
           ||||||||||||||||||||||||||
Sbjct: 96  tttgcggttcaataaagctgtgggaa 121



 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 ttccacagctttcttgaactgcat 45
          ||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24


>zma-MIR396a_MI0001801_Zea_mays_miR396a_stem-loop_137
          Length = 137

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 20 tcttccacagctttcttgaactgcat 45
          ||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119


>ssp-MIR396_MI0018195_Saccharum_ssp._miR396_stem-loop_95
          Length = 95

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 22 ttccacagctttcttgaactgcatc 46
          |||||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 gttcaataaagctgtggga 138
           |||||||||||||||||||
Sbjct: 77  gttcaataaagctgtggga 95


>osa-MIR396a_MI0001046_Oryza_sativa_miR396a_stem-loop_154
          Length = 154

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 20 tcttccacagctttcttgaactgca 44
          |||||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactgca 33



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145


>bdi-MIR396c_MI0018101_Brachypodium_distachyon_miR396c_stem-
          loop_153
          Length = 153

 Score = 48.1 bits (24), Expect = 8e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 20 tcttccacagctttcttgaactgc 43
          ||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 120 gttcaataaagctgtgggaa 139
           ||||||||||||||||||||
Sbjct: 102 gttcaataaagctgtgggaa 121


>ssl-MIR396_MI0019351_Salvia_sclarea_miR396_stem-loop_89
          Length = 89

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 116 tgcggttcaataaagctgtggga 138
           |||||||||||||||||||||||
Sbjct: 67  tgcggttcaataaagctgtggga 89



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 ttccacagctttcttgaactgc 43
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgc 22


>gma-MIR396e_MI0016586_Glycine_max_miR396e_stem-loop_114
          Length = 114

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tcttccacagctttcttgaactg 42
          |||||||||||||||||||||||
Sbjct: 5  tcttccacagctttcttgaactg 27


>vvi-MIR396c_MI0007955_Vitis_vinifera_miR396c_stem-loop_108
          Length = 108

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tcttccacagctttcttgaactg 42
          |||||||||||||||||||||||
Sbjct: 9  tcttccacagctttcttgaactg 31


>gma-MIR396h_MI0018679_Glycine_max_miR396h_stem-loop_148
          Length = 148

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tcttccacagctttcttgaactg 42
          |||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactg 41


>pab-MIR396a_MI0016122_Picea_abies_miR396a_stem-loop_100
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 tcttccacagctttcttgaact 41
          ||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35


>aly-MIR396b_MI0014582_Arabidopsis_lyrata_miR396b_stem-loop_188
          Length = 188

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 tattcttccacagctttcttgaact 41
          |||| ||||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaact 51


>tcc-MIR396a_MI0017511_Theobroma_cacao_miR396a_stem-loop_146
          Length = 146

 Score = 42.1 bits (21), Expect = 5e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 ttccacagctttcttgaactg 42
          |||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41


>bcy-MIR396b_MI0016988_Bruguiera_cylindrica_miR396b_stem-loop_99
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaact 26


>csi-MIR396c_MI0016735_Citrus_sinensis_miR396c_stem-loop_178
          Length = 178

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32


>ccl-MIR396_MI0013304_Citrus_clementine_miR396_stem-loop_277
          Length = 277

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ttccacagctttcttgaact 41
           ||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162


>tcc-MIR396e_MI0017515_Theobroma_cacao_miR396e_stem-loop_146
          Length = 146

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>rco-MIR396_MI0013418_Ricinus_communis_miR396_stem-loop_124
          Length = 124

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 19  ttcttccacagctttcttgaact 41
           |||| ||||||||||||||||||
Sbjct: 120 ttctcccacagctttcttgaact 98


>bdi-MIR396e_MI0018108_Brachypodium_distachyon_miR396e_stem-
          loop_201
          Length = 201

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51


>pta-MIR396_MI0005788_Pinus_taeda_miR396_stem-loop_119
          Length = 119

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36


>zma-MIR396e_MI0013225_Zea_mays_miR396e_stem-loop_166
          Length = 166

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21


>mdm-MIR396c_MI0023095_107
          Length = 107

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 12 ttccacagctttcttgaact 31


>aqc-MIR396b_MI0012095_Aquilegia_caerulea_miR396b_stem-loop_89
          Length = 89

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20


>osa-MIR396c_MI0001048_Oryza_sativa_miR396c_stem-loop_141
          Length = 141

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>mdm-MIR396d_MI0023096_103
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 10 ttccacagctttcttgaact 29


>bgy-MIR396b_MI0016984_Bruguiera_gymnorhiza_miR396b_stem-loop_99
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 7  ttccacagctttcttgaact 26


>ptc-MIR396e_MI0002329_Populus_trichocarpa_miR396e_stem-loop_145
          Length = 145

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>gma-MIR396g_MI0017921_Glycine_max_miR396g_stem-loop_151
          Length = 151

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 56 ttccacagctttcttgaact 75


>bna-MIR396a_MI0005773_Brassica_napus_miR396a_stem-loop_117
          Length = 117

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20


>gma-MIR396d_MI0016503_Glycine_max_miR396d_stem-loop_108
          Length = 108

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>mdm-MIR396f_MI0023098_153
          Length = 153

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                  
Query: 3  gatgatcctctttgtattcttccacagctttcttgaactg 42
          ||||||||||  |||| | |||||| ||||||||||||||
Sbjct: 12 gatgatcctccctgtaattttccacggctttcttgaactg 51


>sbi-MIR396c_MI0001540_Sorghum_bicolor_miR396c_stem-loop_162
          Length = 162

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>ptc-MIR396d_MI0002328_Populus_trichocarpa_miR396d_stem-loop_154
          Length = 154

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>ptc-MIR396c_MI0002327_Populus_trichocarpa_miR396c_stem-loop_102
          Length = 102

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>mtr-MIR396a_MI0005621_Medicago_truncatula_miR396a_stem-loop_93
          Length = 93

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 6  ttccacagctttcttgaact 25


>vvi-MIR396a_MI0006569_Vitis_vinifera_miR396a_stem-loop_116
          Length = 116

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33


>gma-MIR396f_MI0017919_Glycine_max_miR396f_stem-loop_151
          Length = 151

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 56 ttccacagctttcttgaact 75


>gma-MIR396c_MI0010572_Glycine_max_miR396c_stem-loop_117
          Length = 117

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>mdm-MIR396e_MI0023097_107
          Length = 107

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 12 ttccacagctttcttgaact 31


>tcc-MIR396c_MI0017513_Theobroma_cacao_miR396c_stem-loop_152
          Length = 152

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>gma-MIR396b_MI0001786_Glycine_max_miR396b_stem-loop_126
          Length = 126

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40


>vvi-MIR396b_MI0006570_Vitis_vinifera_miR396b_stem-loop_108
          Length = 108

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33


>ath-MIR396b_MI0001014_Arabidopsis_thaliana_miR396b_stem-loop_135
          Length = 135

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30


>zma-MIR396f_MI0013226_Zea_mays_miR396f_stem-loop_117
          Length = 117

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttccacagctttcttgaact 41
          ||||||||||||||||||||
Sbjct: 2  ttccacagctttcttgaact 21


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.