0
         (160 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR482a_MI0010695_155                                             306   1e-84
mdm-MIR482_MI0010695_Malus_domestica_miR482_stem-loop_152             256   2e-69
gma-MIR482c_MI0017851_Glycine_max_miR482c_stem-loop_90                 50   2e-07
gma-MIR482a_MI0007218_Glycine_max_miR482a_stem-loop_95                 50   2e-07
vun-MIR482_MI0019579_Vigna_unguiculata_miR482_stem-loop_100            50   2e-07
pvu-MIR482_MI0010702_Phaseolus_vulgaris_miR482_stem-loop_133           44   1e-05
gma-MIR2118a_MI0017849_Glycine_max_miR2118a_stem-loop_170              40   2e-04

>mdm-MIR482a_MI0010695_155
          Length = 155

 Score =  306 bits (153), Expect = 1e-84
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   gagaagagggaaagggagattggagctgctggaagttttaggaatgggctgtttgggaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagaagagggaaagggagattggagctgctggaagttttaggaatgggctgtttgggaag 60

                                                                       
Query: 63  aargaaaattacaagaataattgtcttgtggggtttcttcccaagcccgcccattcctat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aargaaaattacaagaataattgtcttgtggggtttcttcccaagcccgcccattcctat 120

                                              
Query: 123 gatttccagctgttcctccctttcccttgtatctc 157
           |||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttccagctgttcctccctttcccttgtatctc 155


>mdm-MIR482_MI0010695_Malus_domestica_miR482_stem-loop_152
          Length = 152

 Score =  256 bits (128), Expect = 2e-69
 Identities = 145/150 (96%), Gaps = 1/150 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gagaagagggaaagggagattggagctgctggaagttttaggaatgggctgtttgggaag 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1   gagaagagggaaagggagattggagctgctggaagttttaggaatgggctgtttgggaac 60

                                                                       
Query: 63  aargaaaattacaagaataattgtcttgtggggtttcttcccaagcccgcccattcctat 122
           || |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaggaaa-ttaccacaataattgtcttgtggggtttcttcccaagcccgcccattcctat 119

                                         
Query: 123 gatttccagctgttcctccctttcccttgt 152
           ||||||||||||||||||||||||||||||
Sbjct: 120 gatttccagctgttcctccctttcccttgt 149


>gma-MIR482c_MI0017851_Glycine_max_miR482c_stem-loop_90
          Length = 90

 Score = 50.5 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 96  tttcttcccaagcccgcccattcctatgatttc 128
           |||||||||||  ||||||||||||||||||||
Sbjct: 56  tttcttcccaattccgcccattcctatgatttc 88


>gma-MIR482a_MI0007218_Glycine_max_miR482a_stem-loop_95
          Length = 95

 Score = 50.5 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 96  tttcttcccaagcccgcccattcctatgatttc 128
           |||||||||||  ||||||||||||||||||||
Sbjct: 60  tttcttcccaattccgcccattcctatgatttc 92


>vun-MIR482_MI0019579_Vigna_unguiculata_miR482_stem-loop_100
          Length = 100

 Score = 50.5 bits (25), Expect = 2e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 96  tttcttcccaagcccgcccattcctatgatttc 128
           |||||||||||  ||||||||||||||||||||
Sbjct: 65  tttcttcccaattccgcccattcctatgatttc 97


>pvu-MIR482_MI0010702_Phaseolus_vulgaris_miR482_stem-loop_133
          Length = 133

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 96  tttcttcccaagcccgcccattcctatgat 125
           |||||||||||  |||||||||||||||||
Sbjct: 81  tttcttcccaattccgcccattcctatgat 110


>gma-MIR2118a_MI0017849_Glycine_max_miR2118a_stem-loop_170
          Length = 170

 Score = 40.5 bits (20), Expect = 2e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 112 cccattcctatgatttccagctgttcctccctttcc 147
           ||||||||||||||||||  | ||||||| ||||||
Sbjct: 131 cccattcctatgatttccttcggttcctctctttcc 166


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.