(162 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR399a_MI0023105_115                                             229   2e-61
mdm-MIR399c_MI0023107_115                                             215   3e-57
mdm-MIR399b_MI0023106_107                                             123   1e-29
tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117            58   7e-10
ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94         56   3e-09
vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85           54   1e-08
vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97              52   5e-08
vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90              52   5e-08
osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97                48   7e-07
zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123                   48   7e-07
bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160    48   7e-07
osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110               48   7e-07
sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132            48   7e-07
csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154            48   7e-07
tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112            48   7e-07
csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149            48   7e-07
zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207                   46   3e-06
ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101        46   3e-06
sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136            46   3e-06
sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130            46   3e-06
ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100       44   1e-05
osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149               44   1e-05
csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155            44   1e-05
tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136            44   1e-05
zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94                    44   1e-05
sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93             44   1e-05
aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135         44   1e-05
rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108           42   4e-05
aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127         42   4e-05
tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135            42   4e-05
vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112             42   4e-05
aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167         42   4e-05
tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117            42   4e-05
ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120        42   4e-05
ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123       42   4e-05
ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94                40   2e-04
ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98          40   2e-04
osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117               38   7e-04
tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126            38   7e-04
bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100      38   7e-04
aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157         38   7e-04
zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175                   38   7e-04
mdm-MIR399j_MI0023114_123                                              38   7e-04
osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286               38   7e-04
ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126        38   7e-04
sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121            38   7e-04
sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120            38   7e-04
zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124                   38   7e-04
mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104        38   7e-04
vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82              38   7e-04
ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126        38   7e-04
sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205            38   7e-04

>mdm-MIR399a_MI0023105_115
          Length = 115

 Score =  229 bits (115), Expect = 2e-61
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 25  tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 85  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 115



 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 ttctgccaaaggagaattgc 128
           ||||||||||||||||||||
Sbjct: 31  ttctgccaaaggagaattgc 12



 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  gcaattctcctttggcagaa 55
           ||||||||||||||||||||
Sbjct: 104 gcaattctcctttggcagaa 85


>mdm-MIR399c_MI0023107_115
          Length = 115

 Score =  215 bits (108), Expect = 3e-57
 Identities = 112/115 (97%)
 Strand = Plus / Plus

                                                                       
Query: 25  tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 84
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 85  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 139
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 115



 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  gcaattctcctttggcagaa 55
           ||||||||||||||||||||
Sbjct: 104 gcaattctcctttggcagaa 85


>mdm-MIR399b_MI0023106_107
          Length = 107

 Score =  123 bits (62), Expect = 1e-29
 Identities = 101/115 (87%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 25  tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 84
           ||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 1   tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 60

                                                                  
Query: 85  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 139
           || | ||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccactgg--------atatgctttctgccaaaggagaattgccctgcaattca 107



 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 36 gcaattctcctttggcagaa 55
          ||||||||||||||||||||
Sbjct: 96 gcaattctcctttggcagaa 77


>tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117
          Length = 117

 Score = 58.2 bits (29), Expect = 7e-10
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                   
Query: 15 agggtagggatgaataacagtgcaattctcctttggcagaa 55
          ||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 2  agggtagagaagaataacagcgcaattctcctttggcagaa 42



 Score = 50.3 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 113 gccaaaggagaattgccctgcaattcaaaaactctac 149
           ||||||||||||||||||||| ||||||  |||||||
Sbjct: 78  gccaaaggagaattgccctgccattcaactactctac 114



 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 108 tttctgccaaaggagaattgc 128
           |||||||||||||||||||||
Sbjct: 43  tttctgccaaaggagaattgc 23


>ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94
          Length = 94

 Score = 56.2 bits (28), Expect = 3e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 23 gatgaataacagtgcaattctcctttggcaga 54
          |||||||||| |||||||||||||||||||||
Sbjct: 2  gatgaataactgtgcaattctcctttggcaga 33



 Score = 52.2 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 111 ctgccaaaggagaattgccctgcaattcaa 140
           ||||||||||||||||||||||| ||||||
Sbjct: 64  ctgccaaaggagaattgccctgccattcaa 93



 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 tctgccaaaggagaattgc 128
           |||||||||||||||||||
Sbjct: 33  tctgccaaaggagaattgc 15


>vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85
          Length = 85

 Score = 54.2 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 107 ctttctgccaaaggagaattgccctgc 133
           |||||||||||||||||||||||||||
Sbjct: 55  ctttctgccaaaggagaattgccctgc 81



 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 36 gcaattctcctttggcagaa 55
          ||||||||||||||||||||
Sbjct: 76 gcaattctcctttggcagaa 57


>vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97
          Length = 97

 Score = 52.2 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                        
Query: 25 tgaataacagtgcaattctcctttggcaga 54
          |||||||||| |||||||||||||||||||
Sbjct: 94 tgaataacagggcaattctcctttggcaga 65



 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 110 tctgccaaaggagaattgccctg 132
           |||||||||||||||||||||||
Sbjct: 65  tctgccaaaggagaattgccctg 87



 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 26 gaataacagtgcaattctcctttggcaga 54
          |||||||||||  ||||||||||||||||
Sbjct: 3  gaataacagtgtgattctcctttggcaga 31


>vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90
          Length = 90

 Score = 52.2 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 26 gaataacagtgcaattctcctttggcagaa 55
          ||||||||||||||| ||||||||||||||
Sbjct: 3  gaataacagtgcaatcctcctttggcagaa 32



 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||||||||||||| ||||
Sbjct: 60  tgccaaaggagaattgccctgccattc 86


>osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97
          Length = 97

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 67  tgccaaaggagaattgccctgccattca 94


>zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123
          Length = 123

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 84  tgccaaaggagaattgccctgccattca 111


>bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160
          Length = 160

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 110 tgccaaaggagaattgccctgccattca 137


>osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110
          Length = 110

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 80  tgccaaaggagaattgccctgcgattca 107


>sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132
          Length = 132

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 ctgccaaaggagaattgccctgcaattc 138
           ||||||||||||||||||||||| ||||
Sbjct: 92  ctgccaaaggagaattgccctgccattc 119


>csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154
          Length = 154

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 18  tgccaaaggagaattgccctgccattca 45


>tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112
          Length = 112

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 72  tgccaaaggagaattgccctgccattca 99


>csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149
          Length = 149

 Score = 48.3 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||||||||||||| |||||
Sbjct: 109 tgccaaaggagaattgccctgccattca 136


>zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207
          Length = 207

 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194


>ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101
          Length = 101

 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||||||||||||| ||||
Sbjct: 72  tgccaaaggagaattgccctgccattc 98


>sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136
          Length = 136

 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||||||||||||| ||||
Sbjct: 97  tgccaaaggagaattgccctgcgattc 123


>sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130
          Length = 130

 Score = 46.3 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||||||||||||| ||||
Sbjct: 91  tgccaaaggagaattgccctgcgattc 117


>ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100
          Length = 100

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 tctgccaaaggagaattgccctgcaattca 139
           |||||||||||||| |||||| ||||||||
Sbjct: 68  tctgccaaaggagatttgccccgcaattca 97


>osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149
          Length = 149

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 tgccaaaggagaattgccctgc 133
           ||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140


>csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155
          Length = 155

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 109 ttctgccaaaggagaattgccctgcaattc 138
           ||||||||||||||| |||||| |||||||
Sbjct: 111 ttctgccaaaggagatttgcccggcaattc 140


>tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136
          Length = 136

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 109 ttctgccaaaggagaattgccctgcaattc 138
           ||||||||||||||| |||||| |||||||
Sbjct: 93  ttctgccaaaggagatttgcccggcaattc 122


>zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94
          Length = 94

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 tgccaaaggagaattgccctgc 133
           ||||||||||||||||||||||
Sbjct: 73  tgccaaaggagaattgccctgc 94


>sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93
          Length = 93

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 112 tgccaaaggagaattgccctgc 133
           ||||||||||||||||||||||
Sbjct: 71  tgccaaaggagaattgccctgc 92


>aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135
          Length = 135

 Score = 44.3 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 110 tctgccaaaggagaattgccctgcaattca 139
           |||||||||||||| |||||| ||||||||
Sbjct: 82  tctgccaaaggagatttgccccgcaattca 111


>rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108
          Length = 108

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 109 ttctgccaaaggagaattgccctgcaatt 137
           ||||||||||||||| |||||| ||||||
Sbjct: 80  ttctgccaaaggagatttgcccagcaatt 108


>aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127
          Length = 127

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 111 ctgccaaaggagaattgccctgcaattca 139
           ||||||||||||| |||||| ||||||||
Sbjct: 91  ctgccaaaggagatttgccccgcaattca 119


>tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135
          Length = 135

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 tctgccaaaggagaattgccctgcaattc 138
           |||||||||||||| |||||| |||||||
Sbjct: 93  tctgccaaaggagatttgcccggcaattc 121


>vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112
          Length = 112

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 tctgccaaaggagaattgccctgcaattc 138
           |||||||||||||| |||||| |||||||
Sbjct: 80  tctgccaaaggagatttgcccggcaattc 108


>aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167
          Length = 167

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 tctgccaaaggagaattgccctgcaattc 138
           |||||||||||||| |||||||| |||||
Sbjct: 110 tctgccaaaggagatttgccctgtaattc 138


>tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117
          Length = 117

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 111 ctgccaaaggagaattgccctgcaattca 139
           ||||||||||||| |||||| ||||||||
Sbjct: 76  ctgccaaaggagatttgccccgcaattca 104


>ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120
          Length = 120

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 111 ctgccaaaggagaattgccctgcaattca 139
           ||||||||||||| |||||| ||||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaattca 118


>ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123
          Length = 123

 Score = 42.3 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 tctgccaaaggagaattgccctgcaattc 138
           |||||||||||||| |||||||| |||||
Sbjct: 91  tctgccaaaggagatttgccctgtaattc 119


>ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94
          Length = 94

 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 ctgccaaaggagaattgccc 130
           ||||||||||||||||||||
Sbjct: 73  ctgccaaaggagaattgccc 92


>ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98
          Length = 98

 Score = 40.3 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 112 tgccaaaggagaattgccctgcaattca 139
           |||||||||||| ||||||||| |||||
Sbjct: 67  tgccaaaggagatttgccctgccattca 94


>osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117
          Length = 117

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 110 tctgccaaaggagaattgccctgcaat 136
           |||||||||||||| |||||| |||||
Sbjct: 85  tctgccaaaggagatttgcccagcaat 111


>tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126
          Length = 126

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 112 tgccaaaggagaattgccc 130
           |||||||||||||||||||
Sbjct: 108 tgccaaaggagaattgccc 126


>bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100
          Length = 100

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 ctgccaaaggagaattgccctgc 133
           |||||||||||||||| ||||||
Sbjct: 72  ctgccaaaggagaattaccctgc 94


>aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157
          Length = 157

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 ctgccaaaggagaattgccctgcaatt 137
           ||||||||||||| |||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136


>zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175
          Length = 175

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 ctgccaaaggagaattgccctgc 133
           ||||||||||||| |||||||||
Sbjct: 153 ctgccaaaggagagttgccctgc 175


>mdm-MIR399j_MI0023114_123
          Length = 123

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 ctgccaaaggagaattgccctgc 133
           ||||||||||||| |||||||||
Sbjct: 82  ctgccaaaggagagttgccctgc 104


>osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286
          Length = 286

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 ctgccaaaggagaattgccctgc 133
           ||||||||||||| |||||||||
Sbjct: 255 ctgccaaaggagagttgccctgc 277


>ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126
          Length = 126

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121
          Length = 121

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 tctgccaaaggagaattgccctg 132
           |||||||||||||| ||||||||
Sbjct: 80  tctgccaaaggagagttgccctg 102


>sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120
          Length = 120

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 110 tctgccaaaggagaattgccctgcaat 136
           |||||||||||||| |||||| |||||
Sbjct: 79  tctgccaaaggagatttgcccagcaat 105


>zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124
          Length = 124

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 tctgccaaaggagaattgccctg 132
           |||||||||||||| ||||||||
Sbjct: 83  tctgccaaaggagagttgccctg 105


>mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104
          Length = 104

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 ctgccaaaggagaattgccctgcaatt 137
           ||||||||||||| |||||| ||||||
Sbjct: 78  ctgccaaaggagatttgcccagcaatt 104


>vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82
          Length = 82

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 tctgccaaaggagaattgccctg 132
           |||||||||||||| ||||||||
Sbjct: 50  tctgccaaaggagagttgccctg 72


>ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126
          Length = 126

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 112 tgccaaaggagaattgccctgcaattc 138
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205
          Length = 205

 Score = 38.3 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 111 ctgccaaaggagaattgccctgc 133
           ||||||||||||| |||||||||
Sbjct: 165 ctgccaaaggagagttgccctgc 187


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.