(132 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR399b_MI0023106_107                                             212   2e-56
mdm-MIR399a_MI0023105_115                                             123   1e-29
mdm-MIR399c_MI0023107_115                                             113   1e-26
vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85           54   1e-08
tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117            52   4e-08
ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94         52   4e-08
osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97                48   7e-07
vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97              48   7e-07
zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123                   48   7e-07
bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160    48   7e-07
osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110               48   7e-07
sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132            48   7e-07
csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154            48   7e-07
tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112            48   7e-07
csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149            48   7e-07
zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207                   46   3e-06
ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101        46   3e-06
sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136            46   3e-06
vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90              46   3e-06
sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130            46   3e-06
ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100       44   1e-05
osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149               44   1e-05
csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155            44   1e-05
tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136            44   1e-05
zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94                    44   1e-05
sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93             44   1e-05
aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135         44   1e-05
rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108           42   4e-05
aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127         42   4e-05
tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135            42   4e-05
vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112             42   4e-05
aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167         42   4e-05
tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117            42   4e-05
ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120        42   4e-05
ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123       42   4e-05
ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94                40   2e-04
ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98          40   2e-04
osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117               38   6e-04
mtr-MIR399f_MI0005587_Medicago_truncatula_miR399f_stem-loop_104        38   6e-04
tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126            38   6e-04
bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100      38   6e-04
aly-MIR399a_MI0014588_Arabidopsis_lyrata_miR399a_stem-loop_162         38   6e-04
mtr-MIR399a_MI0001749_Medicago_truncatula_miR399a_stem-loop_134        38   6e-04
aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157         38   6e-04
vvi-MIR399d_MI0007961_Vitis_vinifera_miR399d_stem-loop_105             38   6e-04
zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175                   38   6e-04
mdm-MIR399j_MI0023114_123                                              38   6e-04
osa-MIR399g_MI0001059_Oryza_sativa_miR399g_stem-loop_119               38   6e-04
osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286               38   6e-04
mtr-MIR399e_MI0001750_Medicago_truncatula_miR399e_stem-loop_134        38   6e-04
ath-MIR399e_MI0001024_Arabidopsis_thaliana_miR399e_stem-loop_109       38   6e-04
bna-MIR399_MI0005774_Brassica_napus_miR399_stem-loop_102               38   6e-04
ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126        38   6e-04
sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121            38   6e-04
sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120            38   6e-04
zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124                   38   6e-04
mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104        38   6e-04
ath-MIR399f_MI0001025_Arabidopsis_thaliana_miR399f_stem-loop_118       38   6e-04
vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82              38   6e-04
rco-MIR399f_MI0013427_Ricinus_communis_miR399f_stem-loop_87            38   6e-04
ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126        38   6e-04
sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205            38   6e-04
aly-MIR399e_MI0014592_Arabidopsis_lyrata_miR399e_stem-loop_191         38   6e-04

>mdm-MIR399b_MI0023106_107
          Length = 107

 Score =  212 bits (107), Expect = 2e-56
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 14  tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 60

                                                          
Query: 74  taccactggatatgctttctgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccactggatatgctttctgccaaaggagaattgccctgcaattca 107


>mdm-MIR399a_MI0023105_115
          Length = 115

 Score =  123 bits (62), Expect = 1e-29
 Identities = 101/115 (87%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 14  tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 73
           ||||||||||||||| ||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 1   tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 74  taccactgg--------atatgctttctgccaaaggagaattgccctgcaattca 120
           || | ||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 115



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  ttctgccaaaggagaattgc 109
           ||||||||||||||||||||
Sbjct: 31  ttctgccaaaggagaattgc 12


>mdm-MIR399c_MI0023107_115
          Length = 115

 Score =  113 bits (57), Expect = 1e-26
 Identities = 99/115 (86%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 14  tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 73
           ||||||||||||  | ||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 1   tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 74  taccactgg--------atatgctttctgccaaaggagaattgccctgcaattca 120
           || | ||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 115


>vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85
          Length = 85

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 88  ctttctgccaaaggagaattgccctgc 114
           |||||||||||||||||||||||||||
Sbjct: 55  ctttctgccaaaggagaattgccctgc 81


>tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117
          Length = 117

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 4  agggtagggatgaataacagtgcaaatctcctttggcagaaa 45
          ||||||| || ||||||||| |||| ||||||||||||||||
Sbjct: 2  agggtagagaagaataacagcgcaattctcctttggcagaaa 43



 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 94  gccaaaggagaattgccctgcaattcaataactctac 130
           ||||||||||||||||||||| ||||||  |||||||
Sbjct: 78  gccaaaggagaattgccctgccattcaactactctac 114



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 89  tttctgccaaaggagaattgc 109
           |||||||||||||||||||||
Sbjct: 43  tttctgccaaaggagaattgc 23


>ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94
          Length = 94

 Score = 52.0 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 92  ctgccaaaggagaattgccctgcaattcaa 121
           ||||||||||||||||||||||| ||||||
Sbjct: 64  ctgccaaaggagaattgccctgccattcaa 93



 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 gatgaataacagtgcaaatctcctttggcaga 43
          |||||||||| |||||| ||||||||||||||
Sbjct: 2  gatgaataactgtgcaattctcctttggcaga 33



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 91  tctgccaaaggagaattgc 109
           |||||||||||||||||||
Sbjct: 33  tctgccaaaggagaattgc 15


>osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97
          Length = 97

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 67  tgccaaaggagaattgccctgccattca 94


>vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97
          Length = 97

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 91  tctgccaaaggagaattgccctgcaattcaat 122
           |||||||||||||||||||||||  |||||||
Sbjct: 65  tctgccaaaggagaattgccctgttattcaat 96



 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                        
Query: 14 tgaataacagtgcaaatctcctttggcaga 43
          |||||||||| |||| ||||||||||||||
Sbjct: 94 tgaataacagggcaattctcctttggcaga 65


>zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123
          Length = 123

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 84  tgccaaaggagaattgccctgccattca 111


>bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160
          Length = 160

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 110 tgccaaaggagaattgccctgccattca 137


>osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110
          Length = 110

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 80  tgccaaaggagaattgccctgcgattca 107


>sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132
          Length = 132

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 92  ctgccaaaggagaattgccctgcaattc 119
           ||||||||||||||||||||||| ||||
Sbjct: 92  ctgccaaaggagaattgccctgccattc 119


>csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154
          Length = 154

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 18  tgccaaaggagaattgccctgccattca 45


>tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112
          Length = 112

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 72  tgccaaaggagaattgccctgccattca 99


>csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149
          Length = 149

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||||||||||||| |||||
Sbjct: 109 tgccaaaggagaattgccctgccattca 136


>zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207
          Length = 207

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194


>ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101
          Length = 101

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||||||||||||| ||||
Sbjct: 72  tgccaaaggagaattgccctgccattc 98


>sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136
          Length = 136

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||||||||||||| ||||
Sbjct: 97  tgccaaaggagaattgccctgcgattc 123


>vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90
          Length = 90

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 15 gaataacagtgcaaatctcctttggcagaaa 45
          ||||||||||||||  |||||||||||||||
Sbjct: 3  gaataacagtgcaatcctcctttggcagaaa 33



 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||||||||||||| ||||
Sbjct: 60  tgccaaaggagaattgccctgccattc 86


>sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130
          Length = 130

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||||||||||||| ||||
Sbjct: 91  tgccaaaggagaattgccctgcgattc 117


>ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 91  tctgccaaaggagaattgccctgcaattca 120
           |||||||||||||| |||||| ||||||||
Sbjct: 68  tctgccaaaggagatttgccccgcaattca 97



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 86 gcaaatctcctttggcaga 68


>osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149
          Length = 149

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  tgccaaaggagaattgccctgc 114
           ||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140


>csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155
          Length = 155

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 90  ttctgccaaaggagaattgccctgcaattc 119
           ||||||||||||||| |||||| |||||||
Sbjct: 111 ttctgccaaaggagatttgcccggcaattc 140



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  gcaaatctcctttggcagaa 44
           ||||||||||||||||||||
Sbjct: 130 gcaaatctcctttggcagaa 111


>tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136
          Length = 136

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 90  ttctgccaaaggagaattgccctgcaattc 119
           ||||||||||||||| |||||| |||||||
Sbjct: 93  ttctgccaaaggagatttgcccggcaattc 122



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  gcaaatctcctttggcagaa 44
           ||||||||||||||||||||
Sbjct: 112 gcaaatctcctttggcagaa 93


>zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94
          Length = 94

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  tgccaaaggagaattgccctgc 114
           ||||||||||||||||||||||
Sbjct: 73  tgccaaaggagaattgccctgc 94


>sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93
          Length = 93

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  tgccaaaggagaattgccctgc 114
           ||||||||||||||||||||||
Sbjct: 71  tgccaaaggagaattgccctgc 92


>aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135
          Length = 135

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 91  tctgccaaaggagaattgccctgcaattca 120
           |||||||||||||| |||||| ||||||||
Sbjct: 82  tctgccaaaggagatttgccccgcaattca 111



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 100 gcaaatctcctttggcaga 82


>rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108
          Length = 108

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 90  ttctgccaaaggagaattgccctgcaatt 118
           ||||||||||||||| |||||| ||||||
Sbjct: 80  ttctgccaaaggagatttgcccagcaatt 108



 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 25 gcaaatctcctttggcagaa 44
          ||||||||||||||||||||
Sbjct: 99 gcaaatctcctttggcagaa 80


>aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127
          Length = 127

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 92  ctgccaaaggagaattgccctgcaattca 120
           ||||||||||||| |||||| ||||||||
Sbjct: 91  ctgccaaaggagatttgccccgcaattca 119


>tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135
          Length = 135

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 91  tctgccaaaggagaattgccctgcaattc 119
           |||||||||||||| |||||| |||||||
Sbjct: 93  tctgccaaaggagatttgcccggcaattc 121



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 111 gcaaatctcctttggcaga 93


>vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112
          Length = 112

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 91  tctgccaaaggagaattgccctgcaattc 119
           |||||||||||||| |||||| |||||||
Sbjct: 80  tctgccaaaggagatttgcccggcaattc 108



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 98 gcaaatctcctttggcaga 80


>aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167
          Length = 167

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 15  gaataacagtgcaaatctcctttggcaga 43
           |||| |||| |||||||||||||||||||
Sbjct: 138 gaattacagggcaaatctcctttggcaga 110



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 91  tctgccaaaggagaattgccctgcaattc 119
           |||||||||||||| |||||||| |||||
Sbjct: 110 tctgccaaaggagatttgccctgtaattc 138


>tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117
          Length = 117

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 92  ctgccaaaggagaattgccctgcaattca 120
           ||||||||||||| |||||| ||||||||
Sbjct: 76  ctgccaaaggagatttgccccgcaattca 104


>ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120
          Length = 120

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 92  ctgccaaaggagaattgccctgcaattca 120
           ||||||||||||| |||||| ||||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaattca 118


>ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123
          Length = 123

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 15  gaataacagtgcaaatctcctttggcaga 43
           |||| |||| |||||||||||||||||||
Sbjct: 119 gaattacagggcaaatctcctttggcaga 91



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 91  tctgccaaaggagaattgccctgcaattc 119
           |||||||||||||| |||||||| |||||
Sbjct: 91  tctgccaaaggagatttgccctgtaattc 119


>ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94
          Length = 94

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  ctgccaaaggagaattgccc 111
           ||||||||||||||||||||
Sbjct: 73  ctgccaaaggagaattgccc 92


>ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98
          Length = 98

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 93  tgccaaaggagaattgccctgcaattca 120
           |||||||||||| ||||||||| |||||
Sbjct: 67  tgccaaaggagatttgccctgccattca 94


>osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117
          Length = 117

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 91  tctgccaaaggagaattgccctgcaat 117
           |||||||||||||| |||||| |||||
Sbjct: 85  tctgccaaaggagatttgcccagcaat 111



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 103 gcaaatctcctttggcaga 85


>mtr-MIR399f_MI0005587_Medicago_truncatula_miR399f_stem-loop_104
          Length = 104

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 95 gcaaatctcctttggcaga 77


>tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126
          Length = 126

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 93  tgccaaaggagaattgccc 111
           |||||||||||||||||||
Sbjct: 108 tgccaaaggagaattgccc 126


>bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100
          Length = 100

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ctgccaaaggagaattgccctgc 114
           |||||||||||||||| ||||||
Sbjct: 72  ctgccaaaggagaattaccctgc 94


>aly-MIR399a_MI0014588_Arabidopsis_lyrata_miR399a_stem-loop_162
          Length = 162

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 129 gcaaatctcctttggcaga 111


>mtr-MIR399a_MI0001749_Medicago_truncatula_miR399a_stem-loop_134
          Length = 134

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 111 gcaaatctcctttggcaga 93


>aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157
          Length = 157

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 92  ctgccaaaggagaattgccctgcaatt 118
           ||||||||||||| |||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136


>vvi-MIR399d_MI0007961_Vitis_vinifera_miR399d_stem-loop_105
          Length = 105

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 91 gcaaatctcctttggcaga 73


>zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175
          Length = 175

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ctgccaaaggagaattgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 153 ctgccaaaggagagttgccctgc 175


>mdm-MIR399j_MI0023114_123
          Length = 123

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ctgccaaaggagaattgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 82  ctgccaaaggagagttgccctgc 104


>osa-MIR399g_MI0001059_Oryza_sativa_miR399g_stem-loop_119
          Length = 119

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 105 gcaaatctcctttggcaga 87


>osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286
          Length = 286

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ctgccaaaggagaattgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 255 ctgccaaaggagagttgccctgc 277


>mtr-MIR399e_MI0001750_Medicago_truncatula_miR399e_stem-loop_134
          Length = 134

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 111 gcaaatctcctttggcaga 93


>ath-MIR399e_MI0001024_Arabidopsis_thaliana_miR399e_stem-loop_109
          Length = 109

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 95 gcaaatctcctttggcaga 77


>bna-MIR399_MI0005774_Brassica_napus_miR399_stem-loop_102
          Length = 102

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 97 gcaaatctcctttggcaga 79


>ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126
          Length = 126

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121
          Length = 121

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 91  tctgccaaaggagaattgccctg 113
           |||||||||||||| ||||||||
Sbjct: 80  tctgccaaaggagagttgccctg 102


>sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120
          Length = 120

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 91  tctgccaaaggagaattgccctgcaat 117
           |||||||||||||| |||||| |||||
Sbjct: 79  tctgccaaaggagatttgcccagcaat 105



 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 97 gcaaatctcctttggcaga 79


>zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124
          Length = 124

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 91  tctgccaaaggagaattgccctg 113
           |||||||||||||| ||||||||
Sbjct: 83  tctgccaaaggagagttgccctg 105


>mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104
          Length = 104

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 92  ctgccaaaggagaattgccctgcaatt 118
           ||||||||||||| |||||| ||||||
Sbjct: 78  ctgccaaaggagatttgcccagcaatt 104


>ath-MIR399f_MI0001025_Arabidopsis_thaliana_miR399f_stem-loop_118
          Length = 118

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 104 gcaaatctcctttggcaga 86


>vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82
          Length = 82

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 91  tctgccaaaggagaattgccctg 113
           |||||||||||||| ||||||||
Sbjct: 50  tctgccaaaggagagttgccctg 72


>rco-MIR399f_MI0013427_Ricinus_communis_miR399f_stem-loop_87
          Length = 87

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 25 gcaaatctcctttggcaga 43
          |||||||||||||||||||
Sbjct: 78 gcaaatctcctttggcaga 60


>ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126
          Length = 126

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 93  tgccaaaggagaattgccctgcaattc 119
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205
          Length = 205

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 92  ctgccaaaggagaattgccctgc 114
           ||||||||||||| |||||||||
Sbjct: 165 ctgccaaaggagagttgccctgc 187


>aly-MIR399e_MI0014592_Arabidopsis_lyrata_miR399e_stem-loop_191
          Length = 191

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  gcaaatctcctttggcaga 43
           |||||||||||||||||||
Sbjct: 134 gcaaatctcctttggcaga 116


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.