(160 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR399c_MI0023107_115                                             216   2e-57
mdm-MIR399a_MI0023105_115                                             216   2e-57
mdm-MIR399b_MI0023106_107                                             114   8e-27
vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85           54   1e-08
ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94         52   4e-08
tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117            50   2e-07
osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97                48   6e-07
zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123                   48   6e-07
bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160    48   6e-07
osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110               48   6e-07
sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132            48   6e-07
csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154            48   6e-07
tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112            48   6e-07
csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149            48   6e-07
zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207                   46   2e-06
ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101        46   2e-06
vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97              46   2e-06
sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136            46   2e-06
vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90              46   2e-06
sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130            46   2e-06
ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100       44   1e-05
osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149               44   1e-05
csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155            44   1e-05
tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136            44   1e-05
zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94                    44   1e-05
sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93             44   1e-05
aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135         44   1e-05
rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108           42   4e-05
aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127         42   4e-05
tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135            42   4e-05
vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112             42   4e-05
aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167         42   4e-05
tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117            42   4e-05
ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120        42   4e-05
ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123       42   4e-05
ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94                40   2e-04
ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98          40   2e-04
osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117               38   6e-04
tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126            38   6e-04
bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100      38   6e-04
aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157         38   6e-04
zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175                   38   6e-04
mdm-MIR399j_MI0023114_123                                              38   6e-04
osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286               38   6e-04
ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126        38   6e-04
sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121            38   6e-04
sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120            38   6e-04
zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124                   38   6e-04
mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104        38   6e-04
vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82              38   6e-04
ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126        38   6e-04
sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205            38   6e-04

>mdm-MIR399c_MI0023107_115
          Length = 115

 Score =  216 bits (108), Expect = 2e-57
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 84  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 115


>mdm-MIR399a_MI0023105_115
          Length = 115

 Score =  216 bits (108), Expect = 2e-57
 Identities = 112/115 (97%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 83
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaataacagtgcaattctcctttggcagaagtcattctggtgcatatactcttgagtac 60

                                                                  
Query: 84  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 138
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatcgctggatgcatatatatgctttctgccaaaggagaattgccctgcaattca 115



 Score = 40.5 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 108 ttctgccaaaggagaattgc 127
           ||||||||||||||||||||
Sbjct: 31  ttctgccaaaggagaattgc 12


>mdm-MIR399b_MI0023106_107
          Length = 107

 Score =  114 bits (57), Expect = 8e-27
 Identities = 99/115 (86%), Gaps = 8/115 (6%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgaataacagtgnmattctcctttggcagaagtcattctggtgcatatactcttgagtac 83
           ||||||||||||  | ||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 1   tgaataacagtgcaaatctcctttggcagaaatgattctggtgcatttactcttgagtac 60

                                                                  
Query: 84  tatcgctggatrcatatatatgctttctgccaaaggagaattgccctgcaattca 138
           || | ||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taccactgg--------atatgctttctgccaaaggagaattgccctgcaattca 107


>vun-MIR399b_MI0019577_Vigna_unguiculata_miR399b_stem-loop_85
          Length = 85

 Score = 54.5 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 106 ctttctgccaaaggagaattgccctgc 132
           |||||||||||||||||||||||||||
Sbjct: 55  ctttctgccaaaggagaattgccctgc 81


>ptc-MIR399g_MI0002344_Populus_trichocarpa_miR399g_stem-loop_94
          Length = 94

 Score = 52.5 bits (26), Expect = 4e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 110 ctgccaaaggagaattgccctgcaattcaa 139
           ||||||||||||||||||||||| ||||||
Sbjct: 64  ctgccaaaggagaattgccctgccattcaa 93



 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                          
Query: 22 gatgaataacagtgnmattctcctttggcaga 53
          |||||||||| |||  ||||||||||||||||
Sbjct: 2  gatgaataactgtgcaattctcctttggcaga 33



 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 109 tctgccaaaggagaattgc 127
           |||||||||||||||||||
Sbjct: 33  tctgccaaaggagaattgc 15


>tcc-MIR399e_MI0017523_Theobroma_cacao_miR399e_stem-loop_117
          Length = 117

 Score = 50.5 bits (25), Expect = 2e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 112 gccaaaggagaattgccctgcaattcaagaactctac 148
           ||||||||||||||||||||| ||||||  |||||||
Sbjct: 78  gccaaaggagaattgccctgccattcaactactctac 114



 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                   
Query: 14 agggtagggatgaataacagtgnmattctcctttggcagaa 54
          ||||||| || ||||||||| |  |||||||||||||||||
Sbjct: 2  agggtagagaagaataacagcgcaattctcctttggcagaa 42



 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 tttctgccaaaggagaattgc 127
           |||||||||||||||||||||
Sbjct: 43  tttctgccaaaggagaattgc 23


>osa-MIR399b_MI0001054_Oryza_sativa_miR399b_stem-loop_97
          Length = 97

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 67  tgccaaaggagaattgccctgccattca 94


>zma-MIR399a_MI0001802_Zea_mays_miR399a_stem-loop_123
          Length = 123

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 84  tgccaaaggagaattgccctgccattca 111


>bdi-MIR399b_MI0018103_Brachypodium_distachyon_miR399b_stem-loop_160
          Length = 160

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 110 tgccaaaggagaattgccctgccattca 137


>osa-MIR399c_MI0001055_Oryza_sativa_miR399c_stem-loop_110
          Length = 110

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 80  tgccaaaggagaattgccctgcgattca 107


>sbi-MIR399h_MI0001849_Sorghum_bicolor_miR399h_stem-loop_132
          Length = 132

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 110 ctgccaaaggagaattgccctgcaattc 137
           ||||||||||||||||||||||| ||||
Sbjct: 92  ctgccaaaggagaattgccctgccattc 119


>csi-MIR399e_MI0016709_Citrus_sinensis_miR399e_stem-loop_154
          Length = 154

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 18  tgccaaaggagaattgccctgccattca 45


>tcc-MIR399g_MI0017525_Theobroma_cacao_miR399g_stem-loop_112
          Length = 112

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 72  tgccaaaggagaattgccctgccattca 99


>csi-MIR399c_MI0016710_Citrus_sinensis_miR399c_stem-loop_149
          Length = 149

 Score = 48.5 bits (24), Expect = 6e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||||||||||||| |||||
Sbjct: 109 tgccaaaggagaattgccctgccattca 136


>zma-MIR399c_MI0001803_Zea_mays_miR399c_stem-loop_207
          Length = 207

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||||||||||||| ||||
Sbjct: 168 tgccaaaggagaattgccctgcgattc 194


>ptc-MIR399f_MI0002343_Populus_trichocarpa_miR399f_stem-loop_101
          Length = 101

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||||||||||||| ||||
Sbjct: 72  tgccaaaggagaattgccctgccattc 98


>vvi-MIR399a_MI0006573_Vitis_vinifera_miR399a_stem-loop_97
          Length = 97

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 109 tctgccaaaggagaattgccctg 131
           |||||||||||||||||||||||
Sbjct: 65  tctgccaaaggagaattgccctg 87



 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 25 gaataacagtgnmattctcctttggcaga 53
          |||||||||||  ||||||||||||||||
Sbjct: 3  gaataacagtgtgattctcctttggcaga 31



 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                        
Query: 24 tgaataacagtgnmattctcctttggcaga 53
          |||||||||| |  ||||||||||||||||
Sbjct: 94 tgaataacagggcaattctcctttggcaga 65


>sbi-MIR399a_MI0001541_Sorghum_bicolor_miR399a_stem-loop_136
          Length = 136

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||||||||||||| ||||
Sbjct: 97  tgccaaaggagaattgccctgcgattc 123


>vvi-MIR399h_MI0006577_Vitis_vinifera_miR399h_stem-loop_90
          Length = 90

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||||||||||||| ||||
Sbjct: 60  tgccaaaggagaattgccctgccattc 86



 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                        
Query: 25 gaataacagtgnmattctcctttggcagaa 54
          |||||||||||  || ||||||||||||||
Sbjct: 3  gaataacagtgcaatcctcctttggcagaa 32


>sbi-MIR399c_MI0001542_Sorghum_bicolor_miR399c_stem-loop_130
          Length = 130

 Score = 46.5 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||||||||||||| ||||
Sbjct: 91  tgccaaaggagaattgccctgcgattc 117


>ath-MIR399d_MI0001023_Arabidopsis_thaliana_miR399d_stem-loop_100
          Length = 100

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 109 tctgccaaaggagaattgccctgcaattca 138
           |||||||||||||| |||||| ||||||||
Sbjct: 68  tctgccaaaggagatttgccccgcaattca 97


>osa-MIR399a_MI0001053_Oryza_sativa_miR399a_stem-loop_149
          Length = 149

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 111 tgccaaaggagaattgccctgc 132
           ||||||||||||||||||||||
Sbjct: 119 tgccaaaggagaattgccctgc 140


>csi-MIR399a_MI0016712_Citrus_sinensis_miR399a_stem-loop_155
          Length = 155

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 108 ttctgccaaaggagaattgccctgcaattc 137
           ||||||||||||||| |||||| |||||||
Sbjct: 111 ttctgccaaaggagatttgcccggcaattc 140


>tcc-MIR399d_MI0017522_Theobroma_cacao_miR399d_stem-loop_136
          Length = 136

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 108 ttctgccaaaggagaattgccctgcaattc 137
           ||||||||||||||| |||||| |||||||
Sbjct: 93  ttctgccaaaggagatttgcccggcaattc 122


>zma-MIR399h_MI0013234_Zea_mays_miR399h_stem-loop_94
          Length = 94

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 111 tgccaaaggagaattgccctgc 132
           ||||||||||||||||||||||
Sbjct: 73  tgccaaaggagaattgccctgc 94


>sbi-MIR399j_MI0010900_Sorghum_bicolor_miR399j_stem-loop_93
          Length = 93

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 111 tgccaaaggagaattgccctgc 132
           ||||||||||||||||||||||
Sbjct: 71  tgccaaaggagaattgccctgc 92


>aly-MIR399d_MI0014591_Arabidopsis_lyrata_miR399d_stem-loop_135
          Length = 135

 Score = 44.5 bits (22), Expect = 1e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 109 tctgccaaaggagaattgccctgcaattca 138
           |||||||||||||| |||||| ||||||||
Sbjct: 82  tctgccaaaggagatttgccccgcaattca 111


>rco-MIR399e_MI0013426_Ricinus_communis_miR399e_stem-loop_108
          Length = 108

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 108 ttctgccaaaggagaattgccctgcaatt 136
           ||||||||||||||| |||||| ||||||
Sbjct: 80  ttctgccaaaggagatttgcccagcaatt 108


>aly-MIR399i_MI0014638_Arabidopsis_lyrata_miR399i_stem-loop_127
          Length = 127

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 ctgccaaaggagaattgccctgcaattca 138
           ||||||||||||| |||||| ||||||||
Sbjct: 91  ctgccaaaggagatttgccccgcaattca 119


>tcc-MIR399b_MI0017520_Theobroma_cacao_miR399b_stem-loop_135
          Length = 135

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 109 tctgccaaaggagaattgccctgcaattc 137
           |||||||||||||| |||||| |||||||
Sbjct: 93  tctgccaaaggagatttgcccggcaattc 121


>vvi-MIR399e_MI0006575_Vitis_vinifera_miR399e_stem-loop_112
          Length = 112

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 109 tctgccaaaggagaattgccctgcaattc 137
           |||||||||||||| |||||| |||||||
Sbjct: 80  tctgccaaaggagatttgcccggcaattc 108


>aly-MIR399f_MI0014593_Arabidopsis_lyrata_miR399f_stem-loop_167
          Length = 167

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 109 tctgccaaaggagaattgccctgcaattc 137
           |||||||||||||| |||||||| |||||
Sbjct: 110 tctgccaaaggagatttgccctgtaattc 138


>tcc-MIR399h_MI0017526_Theobroma_cacao_miR399h_stem-loop_117
          Length = 117

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 ctgccaaaggagaattgccctgcaattca 138
           ||||||||||||| |||||| ||||||||
Sbjct: 76  ctgccaaaggagatttgccccgcaattca 104


>ptc-MIR399a_MI0002338_Populus_trichocarpa_miR399a_stem-loop_120
          Length = 120

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 110 ctgccaaaggagaattgccctgcaattca 138
           ||||||||||||| |||||| ||||||||
Sbjct: 90  ctgccaaaggagatttgccccgcaattca 118


>ath-MIR399a_MI0001020_Arabidopsis_thaliana_miR399a_stem-loop_123
          Length = 123

 Score = 42.5 bits (21), Expect = 4e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 109 tctgccaaaggagaattgccctgcaattc 137
           |||||||||||||| |||||||| |||||
Sbjct: 91  tctgccaaaggagatttgccctgtaattc 119


>ssl-MIR399_MI0019354_Salvia_sclarea_miR399_stem-loop_94
          Length = 94

 Score = 40.5 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 110 ctgccaaaggagaattgccc 129
           ||||||||||||||||||||
Sbjct: 73  ctgccaaaggagaattgccc 92


>ghr-MIR399d_MI0013557_Gossypium_hirsutum_miR399d_stem-loop_98
          Length = 98

 Score = 40.5 bits (20), Expect = 2e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 111 tgccaaaggagaattgccctgcaattca 138
           |||||||||||| ||||||||| |||||
Sbjct: 67  tgccaaaggagatttgccctgccattca 94


>osa-MIR399f_MI0001058_Oryza_sativa_miR399f_stem-loop_117
          Length = 117

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 109 tctgccaaaggagaattgccctgcaat 135
           |||||||||||||| |||||| |||||
Sbjct: 85  tctgccaaaggagatttgcccagcaat 111


>tae-MIR399_MI0006176_Triticum_aestivum_miR399_stem-loop_126
          Length = 126

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 111 tgccaaaggagaattgccc 129
           |||||||||||||||||||
Sbjct: 108 tgccaaaggagaattgccc 126


>bdi-MIR399_MI0011572_Brachypodium_distachyon_miR399_stem-loop_100
          Length = 100

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 ctgccaaaggagaattgccctgc 132
           |||||||||||||||| ||||||
Sbjct: 72  ctgccaaaggagaattaccctgc 94


>aly-MIR399g_MI0014636_Arabidopsis_lyrata_miR399g_stem-loop_157
          Length = 157

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 110 ctgccaaaggagaattgccctgcaatt 136
           ||||||||||||| |||||| ||||||
Sbjct: 110 ctgccaaaggagatttgccccgcaatt 136


>zma-MIR399j_MI0013236_Zea_mays_miR399j_stem-loop_175
          Length = 175

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 ctgccaaaggagaattgccctgc 132
           ||||||||||||| |||||||||
Sbjct: 153 ctgccaaaggagagttgccctgc 175


>mdm-MIR399j_MI0023114_123
          Length = 123

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 ctgccaaaggagaattgccctgc 132
           ||||||||||||| |||||||||
Sbjct: 82  ctgccaaaggagagttgccctgc 104


>osa-MIR399d_MI0001056_Oryza_sativa_miR399d_stem-loop_286
          Length = 286

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 ctgccaaaggagaattgccctgc 132
           ||||||||||||| |||||||||
Sbjct: 255 ctgccaaaggagagttgccctgc 277


>ptc-MIR399c_MI0002340_Populus_trichocarpa_miR399c_stem-loop_126
          Length = 126

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399i_MI0001850_Sorghum_bicolor_miR399i_stem-loop_121
          Length = 121

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 109 tctgccaaaggagaattgccctg 131
           |||||||||||||| ||||||||
Sbjct: 80  tctgccaaaggagagttgccctg 102


>sbi-MIR399f_MI0001545_Sorghum_bicolor_miR399f_stem-loop_120
          Length = 120

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 109 tctgccaaaggagaattgccctgcaat 135
           |||||||||||||| |||||| |||||
Sbjct: 79  tctgccaaaggagatttgcccagcaat 105


>zma-MIR399e_MI0001806_Zea_mays_miR399e_stem-loop_124
          Length = 124

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 109 tctgccaaaggagaattgccctg 131
           |||||||||||||| ||||||||
Sbjct: 83  tctgccaaaggagagttgccctg 105


>mtr-MIR399g_MI0005588_Medicago_truncatula_miR399g_stem-loop_104
          Length = 104

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 110 ctgccaaaggagaattgccctgcaatt 136
           ||||||||||||| |||||| ||||||
Sbjct: 78  ctgccaaaggagatttgcccagcaatt 104


>vvi-MIR399c_MI0007960_Vitis_vinifera_miR399c_stem-loop_82
          Length = 82

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 109 tctgccaaaggagaattgccctg 131
           |||||||||||||| ||||||||
Sbjct: 50  tctgccaaaggagagttgccctg 72


>ptc-MIR399b_MI0002339_Populus_trichocarpa_miR399b_stem-loop_126
          Length = 126

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 tgccaaaggagaattgccctgcaattc 137
           |||||||||||| |||||| |||||||
Sbjct: 97  tgccaaaggagatttgcccggcaattc 123


>sbi-MIR399d_MI0001543_Sorghum_bicolor_miR399d_stem-loop_205
          Length = 205

 Score = 38.5 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 ctgccaaaggagaattgccctgc 132
           ||||||||||||| |||||||||
Sbjct: 165 ctgccaaaggagagttgccctgc 187


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.