3
         (183 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR482c_MI0023127_141                                             274   9e-75
mdm-MIR482d_MI0023143_106                                              70   2e-13
mdm-MIR482b_MI0023126_106                                              70   2e-13

>mdm-MIR482c_MI0023127_141
          Length = 141

 Score =  274 bits (137), Expect = 9e-75
 Identities = 141/141 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  ggaataggaaggctttgaggaggtttatggagtggaagggtaggaaagaagtaacttcct 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ggaataggaaggctttgaggaggtttatggagtggaagggtaggaaagaagtaacttcct 60

                                                                       
Query: 83  ttttrggtctcaaattctggagatcgaatttctttcctaaccctcccattccttcaattt 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttttrggtctcaaattctggagatcgaatttctttcctaaccctcccattccttcaattt 120

                                
Query: 143 cctaaagrttatcccttttcc 163
           |||||||||||||||||||||
Sbjct: 121 cctaaagrttatcccttttcc 141


>mdm-MIR482d_MI0023143_106
          Length = 106

 Score = 70.4 bits (35), Expect = 2e-13
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                       
Query: 50  tggagtggaagggtaggaaagaagtaacttcctttttrggtctcaaattctggagatcga 109
           |||| ||||||||||||||||||| ||||||  || |  ||  |||||||  |||||  |
Sbjct: 11  tggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattcaagagataaa 70

                                            
Query: 110 atttctttcctaaccctcccattccttcaattt 142
           |||||||||||| ||||||||||||||| ||||
Sbjct: 71  atttctttcctatccctcccattccttckattt 103


>mdm-MIR482b_MI0023126_106
          Length = 106

 Score = 70.4 bits (35), Expect = 2e-13
 Identities = 78/93 (83%)
 Strand = Plus / Plus

                                                                       
Query: 50  tggagtggaagggtaggaaagaagtaacttcctttttrggtctcaaattctggagatcga 109
           |||| ||||||||||||||||||| ||||||  || |  ||  |||||||  |||||  |
Sbjct: 11  tggaatggaagggtaggaaagaagaaacttctcttgtatgttccaaattcaagagataaa 70

                                            
Query: 110 atttctttcctaaccctcccattccttcaattt 142
           |||||||||||| ||||||||||||||| ||||
Sbjct: 71  atttctttcctatccctcccattccttckattt 103


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.