(108 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR171j_MI0023051_89                                              174   6e-45
mdm-MIR171k_MI0023052_99                                              154   6e-39
mdm-MIR171l_MI0023053_99                                              154   6e-39
tcc-MIR171c_MI0017491_Theobroma_cacao_miR171c_stem-loop_123            80   1e-16
ptc-MIR171d_MI0002280_Populus_trichocarpa_miR171d_stem-loop_100        74   7e-15
rco-MIR171g_MI0013404_Ricinus_communis_miR171g_stem-loop_89            68   4e-13
ptc-MIR171c_MI0002279_Populus_trichocarpa_miR171c_stem-loop_104        68   4e-13
vvi-MIR171e_MI0006540_Vitis_vinifera_miR171e_stem-loop_103             68   4e-13
mtr-MIR171e_MI0005620_Medicago_truncatula_miR171e_stem-loop_93         66   2e-12
gma-MIR171k_MI0018667_Glycine_max_miR171k_stem-loop_98                 66   2e-12
vvi-MIR171f_MI0006541_Vitis_vinifera_miR171f_stem-loop_103             66   2e-12
gma-MIR171l_MI0018687_Glycine_max_miR171l_stem-loop_98                 66   2e-12
tcc-MIR171b_MI0017490_Theobroma_cacao_miR171b_stem-loop_120            62   3e-11
sly-MIR171d_MI0008368_Solanum_lycopersicum_miR171d_stem-loop_112       62   3e-11
ssl-MIR171b_MI0019347_Salvia_sclarea_miR171b_stem-loop_88              60   1e-10
ppt-MIR171b_MI0005689_Physcomitrella_patens_miR171b_stem-loop_92       52   3e-08
ppt-MIR171a_MI0005688_Physcomitrella_patens_miR171a_stem-loop_91       50   1e-07
sbi-MIR171j_MI0010883_Sorghum_bicolor_miR171j_stem-loop_108            48   4e-07
smo-MIR171d_MI0006059_Selaginella_moellendorffii_miR171d_stem-lo...    46   2e-06
sly-MIR171c_MI0008367_Solanum_lycopersicum_miR171c_stem-loop_121       44   7e-06
osa-MIR171a_MI0000680_Oryza_sativa_miR171a_stem-loop_96                44   7e-06
csi-MIR171a_MI0016699_Citrus_sinensis_miR171a_stem-loop_97             44   7e-06
ccl-MIR171_MI0013301_Citrus_clementine_miR171_stem-loop_321            44   7e-06
bna-MIR171f_MI0006455_Brassica_napus_miR171f_stem-loop_119             40   1e-04
zma-MIR171a_MI0001491_Zea_mays_miR171a_stem-loop_99                    40   1e-04
ptc-MIR171k_MI0005114_Populus_trichocarpa_miR171k_stem-loop_78         40   1e-04
smo-MIR171a_MI0006056_Selaginella_moellendorffii_miR171a_stem-lo...    40   1e-04
tcc-MIR171a_MI0017489_Theobroma_cacao_miR171a_stem-loop_119            40   1e-04
ath-MIR171a_MI0000214_Arabidopsis_thaliana_miR171a_stem-loop_123       40   1e-04
bra-MIR171e_MI0010660_Brassica_rapa_miR171e_stem-loop_119              40   1e-04
bna-MIR171g_MI0005771_Brassica_napus_miR171g_stem-loop_80              40   1e-04
bdi-MIR171a_MI0011559_Brachypodium_distachyon_miR171a_stem-loop_120    40   1e-04
mdm-MIR171c_MI0023044_122                                              40   1e-04
mdm-MIR171e_MI0023046_142                                              40   1e-04
aly-MIR171a_MI0014560_Arabidopsis_lyrata_miR171a_stem-loop_198         40   1e-04
zma-MIR171n_MI0013208_Zea_mays_miR171n_stem-loop_78                    40   1e-04
sbi-MIR171g_MI0010880_Sorghum_bicolor_miR171g_stem-loop_77             40   1e-04
mdm-MIR171d_MI0023045_120                                              40   1e-04
zma-MIR171j_MI0001836_Zea_mays_miR171j_stem-loop_129                   38   4e-04
sbi-MIR171b_MI0001564_Sorghum_bicolor_miR171b_stem-loop_132            38   4e-04

>mdm-MIR171j_MI0023051_89
          Length = 89

 Score =  174 bits (87), Expect = 6e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 11 agcgatgttggtgaggttcaatccgaagacagatttgcacatycccgcccgcgtaaattg 70
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  agcgatgttggtgaggttcaatccgaagacagatttgcacatycccgcccgcgtaaattg 60

                                       
Query: 71 atctcagattgagccgcgccaatatcact 99
          |||||||||||||||||||||||||||||
Sbjct: 61 atctcagattgagccgcgccaatatcact 89


>mdm-MIR171k_MI0023052_99
          Length = 99

 Score =  154 bits (77), Expect = 6e-39
 Identities = 90/95 (94%)
 Strand = Plus / Plus

                                                                       
Query: 10  aagcgatgttggtgaggttcaatccgaagacagatttgcacatycccgcccgcgtaaatt 69
           ||||||||||||||||||||||||||||||||||||| ||||| || ||  |||||||||
Sbjct: 5   aagcgatgttggtgaggttcaatccgaagacagatttacacatccctgctggcgtaaatt 64

                                              
Query: 70  gatctcagattgagccgcgccaatatcactttctt 104
           |||||||||||||||||||||||||||||||||||
Sbjct: 65  gatctcagattgagccgcgccaatatcactttctt 99


>mdm-MIR171l_MI0023053_99
          Length = 99

 Score =  154 bits (77), Expect = 6e-39
 Identities = 90/95 (94%)
 Strand = Plus / Plus

                                                                       
Query: 10  aagcgatgttggtgaggttcaatccgaagacagatttgcacatycccgcccgcgtaaatt 69
           ||||||||||||||||||||||||||||||||||||| ||||| || ||  |||||||||
Sbjct: 5   aagcgatgttggtgaggttcaatccgaagacagatttacacatccctgctggcgtaaatt 64

                                              
Query: 70  gatctcagattgagccgcgccaatatcactttctt 104
           |||||||||||||||||||||||||||||||||||
Sbjct: 65  gatctcagattgagccgcgccaatatcactttctt 99


>tcc-MIR171c_MI0017491_Theobroma_cacao_miR171c_stem-loop_123
          Length = 123

 Score = 80.3 bits (40), Expect = 1e-16
 Identities = 82/95 (86%), Gaps = 2/95 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  aagcgatgttggtgaggttcaatccgaagacagatttgcacatycccgcccgcgtaaatt 69
           ||||||||||||||||||||||||||||||| ||||| | ||| |   |   |||||| |
Sbjct: 15  aagcgatgttggtgaggttcaatccgaagacggatttacgcatgcattcagtcgtaaaat 74

                                              
Query: 70  --gatctcagattgagccgcgccaatatcactttc 102
             |||||||||||||||||||||||||||||||||
Sbjct: 75  acgatctcagattgagccgcgccaatatcactttc 109


>ptc-MIR171d_MI0002280_Populus_trichocarpa_miR171d_stem-loop_100
          Length = 100

 Score = 74.3 bits (37), Expect = 7e-15
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 10 aagcgatgttggtgaggttcaatccgaagacagattt 46
          |||||||||||||||||||||||||||||||||||||
Sbjct: 7  aagcgatgttggtgaggttcaatccgaagacagattt 43



 Score = 64.3 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 70  gatctcagattgagccgcgccaatatcacttt 101
           ||||||||||||||||||||||||||||||||
Sbjct: 65  gatctcagattgagccgcgccaatatcacttt 96


>rco-MIR171g_MI0013404_Ricinus_communis_miR171g_stem-loop_89
          Length = 89

 Score = 68.3 bits (34), Expect = 4e-13
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 11 agcgatgttggtgaggttcaatccgaagacagatttgcacat 52
          |||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1  agcgatgttggtgaggttcaatccgaagacggatttacacat 42



 Score = 64.3 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 70  gatctcagattgagccgcgccaatatcacttt 101
           ||||||||||||||||||||||||||||||||
Sbjct: 58  gatctcagattgagccgcgccaatatcacttt 89


>ptc-MIR171c_MI0002279_Populus_trichocarpa_miR171c_stem-loop_104
          Length = 104

 Score = 68.3 bits (34), Expect = 4e-13
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 70  gatctcagattgagccgcgccaatatcactttct 103
           ||||||||||||||||||||||||||||||||||
Sbjct: 69  gatctcagattgagccgcgccaatatcactttct 102



 Score = 66.3 bits (33), Expect = 2e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 aagcgatgttggtgaggttcaatccgaagacagattt 46
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 7  aagcgatgttggtgaggttcaatccgaagacggattt 43


>vvi-MIR171e_MI0006540_Vitis_vinifera_miR171e_stem-loop_103
          Length = 103

 Score = 68.3 bits (34), Expect = 4e-13
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                
Query: 9  taagcgatgttggtgaggttcaatccgaagacagattt 46
          |||||||||||||||||||||||||||||||| |||||
Sbjct: 7  taagcgatgttggtgaggttcaatccgaagacggattt 44



 Score = 60.3 bits (30), Expect = 1e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 70  gatctcagattgagccgcgccaatatcactttct 103
           |||||| |||||||||||||||||||||||||||
Sbjct: 64  gatctctgattgagccgcgccaatatcactttct 97


>mtr-MIR171e_MI0005620_Medicago_truncatula_miR171e_stem-loop_93
          Length = 93

 Score = 66.3 bits (33), Expect = 2e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 aagcgatgttggtgaggttcaatccgaagacagattt 46
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 2  aagcgatgttggtgaggttcaatccgaagacggattt 38



 Score = 64.3 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 70  gatctcagattgagccgcgccaatatcacttt 101
           ||||||||||||||||||||||||||||||||
Sbjct: 62  gatctcagattgagccgcgccaatatcacttt 93


>gma-MIR171k_MI0018667_Glycine_max_miR171k_stem-loop_98
          Length = 98

 Score = 66.3 bits (33), Expect = 2e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 aagcgatgttggtgaggttcaatccgaagacagattt 46
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 5  aagcgatgttggtgaggttcaatccgaagacggattt 41



 Score = 64.3 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 70  gatctcagattgagccgcgccaatatcacttt 101
           ||||||||||||||||||||||||||||||||
Sbjct: 64  gatctcagattgagccgcgccaatatcacttt 95


>vvi-MIR171f_MI0006541_Vitis_vinifera_miR171f_stem-loop_103
          Length = 103

 Score = 66.3 bits (33), Expect = 2e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 69  tgatctcagattgagccgcgccaatatcacttt 101
           |||||||||||||||||||||||||||||||||
Sbjct: 63  tgatctcagattgagccgcgccaatatcacttt 95



 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 aagcgatgttggtgaggttcaatccgaaga 39
          |||||||||||||||||||||||| |||||
Sbjct: 8  aagcgatgttggtgaggttcaatctgaaga 37


>gma-MIR171l_MI0018687_Glycine_max_miR171l_stem-loop_98
          Length = 98

 Score = 66.3 bits (33), Expect = 2e-12
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 10 aagcgatgttggtgaggttcaatccgaagacagattt 46
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 5  aagcgatgttggtgaggttcaatccgaagacggattt 41



 Score = 64.3 bits (32), Expect = 7e-12
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 70  gatctcagattgagccgcgccaatatcacttt 101
           ||||||||||||||||||||||||||||||||
Sbjct: 64  gatctcagattgagccgcgccaatatcacttt 95


>tcc-MIR171b_MI0017490_Theobroma_cacao_miR171b_stem-loop_120
          Length = 120

 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 74  tcagattgagccgcgccaatatcactttctt 104
           |||||||||||||||||||||||||||||||
Sbjct: 78  tcagattgagccgcgccaatatcactttctt 108



 Score = 48.4 bits (24), Expect = 4e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 12 gcgatgttggtgaggttcaatccgaaga 39
          |||||||||||||||||||||| |||||
Sbjct: 19 gcgatgttggtgaggttcaatctgaaga 46


>sly-MIR171d_MI0008368_Solanum_lycopersicum_miR171d_stem-loop_112
          Length = 112

 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 10 aagcgatgttggtgaggttcaatccgaagac 40
          |||||||||||||||||||||||||||||||
Sbjct: 8  aagcgatgttggtgaggttcaatccgaagac 38



 Score = 62.3 bits (31), Expect = 3e-11
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 70  gatctcagattgagccgcgccaatatcactt 100
           |||||||||||||||||||||||||||||||
Sbjct: 66  gatctcagattgagccgcgccaatatcactt 96


>ssl-MIR171b_MI0019347_Salvia_sclarea_miR171b_stem-loop_88
          Length = 88

 Score = 60.3 bits (30), Expect = 1e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 70 gatctcagattgagccgcgccaatatcact 99
          ||||||||||||||||||||||||||||||
Sbjct: 59 gatctcagattgagccgcgccaatatcact 88



 Score = 56.3 bits (28), Expect = 2e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 11 agcgatgttggtgaggttcaatccgaagacagattt 46
          |||||| ||||||||||||||||||||||| |||||
Sbjct: 1  agcgatattggtgaggttcaatccgaagacggattt 36


>ppt-MIR171b_MI0005689_Physcomitrella_patens_miR171b_stem-loop_92
          Length = 92

 Score = 52.3 bits (26), Expect = 3e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 73 ctcagattgagccgcgccaatatcac 98
          ||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86


>ppt-MIR171a_MI0005688_Physcomitrella_patens_miR171a_stem-loop_91
          Length = 91

 Score = 50.4 bits (25), Expect = 1e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 74 tcagattgagccgcgccaatatcac 98
          |||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85


>sbi-MIR171j_MI0010883_Sorghum_bicolor_miR171j_stem-loop_108
          Length = 108

 Score = 48.4 bits (24), Expect = 4e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gattgagccgcgccaatatcactt 100
           ||||||||||||||||||||||||
Sbjct: 84  gattgagccgcgccaatatcactt 107



 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 11 agcgatgttggtgaggttcaatc 33
          |||||| ||||||||||||||||
Sbjct: 4  agcgatattggtgaggttcaatc 26


>smo-MIR171d_MI0006059_Selaginella_moellendorffii_miR171d_stem-
          loop_103
          Length = 103

 Score = 46.4 bits (23), Expect = 2e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 72 tctcagattgagccgcgccaatatcac 98
          ||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91


>sly-MIR171c_MI0008367_Solanum_lycopersicum_miR171c_stem-loop_121
          Length = 121

 Score = 44.4 bits (22), Expect = 7e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 77  gattgagccgcgccaatatcac 98
           ||||||||||||||||||||||
Sbjct: 79  gattgagccgcgccaatatcac 100


>osa-MIR171a_MI0000680_Oryza_sativa_miR171a_stem-loop_96
          Length = 96

 Score = 44.4 bits (22), Expect = 7e-06
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 agcgatgttggtgaggttcaatccga 36
          |||||| |||||||||||||||||||
Sbjct: 7  agcgatattggtgaggttcaatccga 32



 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87


>csi-MIR171a_MI0016699_Citrus_sinensis_miR171a_stem-loop_97
          Length = 97

 Score = 44.4 bits (22), Expect = 7e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 gattgagccgcgccaatatcac 98
          ||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcac 89


>ccl-MIR171_MI0013301_Citrus_clementine_miR171_stem-loop_321
          Length = 321

 Score = 44.4 bits (22), Expect = 7e-06
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 77  gattgagccgcgccaatatcac 98
           ||||||||||||||||||||||
Sbjct: 123 gattgagccgcgccaatatcac 144


>bna-MIR171f_MI0006455_Brassica_napus_miR171f_stem-loop_119
          Length = 119

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 85  gattgagccgcgccaatatc 104


>zma-MIR171a_MI0001491_Zea_mays_miR171a_stem-loop_99
          Length = 99

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99


>ptc-MIR171k_MI0005114_Populus_trichocarpa_miR171k_stem-loop_78
          Length = 78

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78


>smo-MIR171a_MI0006056_Selaginella_moellendorffii_miR171a_stem-
           loop_135
          Length = 135

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 76  agattgagccgcgccaatatcact 99
           ||||||||||| ||||||||||||
Sbjct: 102 agattgagccgtgccaatatcact 125


>tcc-MIR171a_MI0017489_Theobroma_cacao_miR171a_stem-loop_119
          Length = 119

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99


>ath-MIR171a_MI0000214_Arabidopsis_thaliana_miR171a_stem-loop_123
          Length = 123

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 89  gattgagccgcgccaatatc 108


>bra-MIR171e_MI0010660_Brassica_rapa_miR171e_stem-loop_119
          Length = 119

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 85  gattgagccgcgccaatatc 104


>bna-MIR171g_MI0005771_Brassica_napus_miR171g_stem-loop_80
          Length = 80

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78


>bdi-MIR171a_MI0011559_Brachypodium_distachyon_miR171a_stem-
          loop_120
          Length = 120

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70


>mdm-MIR171c_MI0023044_122
          Length = 122

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 97  gattgagccgcgccaatatc 116


>mdm-MIR171e_MI0023046_142
          Length = 142

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 109 gattgagccgcgccaatatc 128


>aly-MIR171a_MI0014560_Arabidopsis_lyrata_miR171a_stem-loop_198
          Length = 198

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 131 gattgagccgcgccaatatc 150


>zma-MIR171n_MI0013208_Zea_mays_miR171n_stem-loop_78
          Length = 78

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77



 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 18 ttggtgaggttcaatccga 36
          |||||||||||||||||||
Sbjct: 4  ttggtgaggttcaatccga 22


>sbi-MIR171g_MI0010880_Sorghum_bicolor_miR171g_stem-loop_77
          Length = 77

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 77 gattgagccgcgccaatatc 96
          ||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77



 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 18 ttggtgaggttcaatccga 36
          |||||||||||||||||||
Sbjct: 3  ttggtgaggttcaatccga 21


>mdm-MIR171d_MI0023045_120
          Length = 120

 Score = 40.4 bits (20), Expect = 1e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  gattgagccgcgccaatatc 96
           ||||||||||||||||||||
Sbjct: 101 gattgagccgcgccaatatc 120


>zma-MIR171j_MI0001836_Zea_mays_miR171j_stem-loop_129
          Length = 129

 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 72  tctcagattgagccgcgccaatatcac 98
           |||| |||||||||| |||||||||||
Sbjct: 86  tctctgattgagccgtgccaatatcac 112


>sbi-MIR171b_MI0001564_Sorghum_bicolor_miR171b_stem-loop_132
          Length = 132

 Score = 38.4 bits (19), Expect = 4e-04
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 72  tctcagattgagccgcgccaatatcac 98
           |||| |||||||||| |||||||||||
Sbjct: 89  tctctgattgagccgtgccaatatcac 115


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.