(140 letters)

Database: hairpin_length.fa 
           18,432 sequences; 1,887,117 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdm-MIR535a_MI0023128_95                                              188   3e-49
mdm-MIR535d_MI0023131_95                                              145   4e-36
mdm-MIR535b_MI0023129_95                                              141   6e-35
mdm-MIR535c_MI0023130_83                                              107   9e-25
rco-MIR535_MI0013431_Ricinus_communis_miR535_stem-loop_91              50   2e-07
vvi-MIR535a_MI0006580_Vitis_vinifera_miR535a_stem-loop_101             48   7e-07
vvi-MIR535b_MI0006581_Vitis_vinifera_miR535b_stem-loop_101             48   7e-07
ppt-MIR535b_MI0003503_Physcomitrella_patens_miR535b_stem-loop_81       46   3e-06
ppt-MIR535c_MI0003504_Physcomitrella_patens_miR535c_stem-loop_81       46   3e-06
ppt-MIR535a_MI0003502_Physcomitrella_patens_miR535a_stem-loop_135      46   3e-06
ppt-MIR535d_MI0004725_Physcomitrella_patens_miR535d_stem-loop_85       44   1e-05
tcc-MIR535_MI0017532_Theobroma_cacao_miR535_stem-loop_120              44   1e-05
osa-MIR535_MI0003505_Oryza_sativa_miR535_stem-loop_94                  44   1e-05
vvi-MIR535c_MI0006583_Vitis_vinifera_miR535c_stem-loop_101             44   1e-05
aqc-MIR535_MI0012112_Aquilegia_caerulea_miR535_stem-loop_87            42   4e-05
pab-MIR535_MI0016129_Picea_abies_miR535_stem-loop_129                  42   4e-05

>mdm-MIR535a_MI0023128_95
          Length = 95

 Score =  188 bits (95), Expect = 3e-49
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatgttgtgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatgttgtgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttg 60

                                              
Query: 83  tttacgggcgtgccctctcttgttgtcattcggtc 117
           |||||||||||||||||||||||||||||||||||
Sbjct: 61  tttacgggcgtgccctctcttgttgtcattcggtc 95


>mdm-MIR535d_MI0023131_95
          Length = 95

 Score =  145 bits (73), Expect = 4e-36
 Identities = 85/89 (95%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatgttgtgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttg 82
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1   gatgttgtgtgacgacgagagagagcacgcttgtcatcacccatgaaaggatcatggttg 60

                                        
Query: 83  tttacgggcgtgccctctcttgttgtcat 111
           ||||||||||||| || ||||||||||||
Sbjct: 61  tttacgggcgtgctctttcttgttgtcat 89


>mdm-MIR535b_MI0023129_95
          Length = 95

 Score =  141 bits (71), Expect = 6e-35
 Identities = 89/95 (93%)
 Strand = Plus / Plus

                                                                       
Query: 23  gatgttgtgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttg 82
           ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1   gatgttgtgtgacaaggagagagagcacgcttgtcatcacccatgaacggatcatggttg 60

                                              
Query: 83  tttacgggcgtgccctctcttgttgtcattcggtc 117
           ||||||||||||| ||||||| ||||||| |||||
Sbjct: 61  tttacgggcgtgctctctcttcttgtcatacggtc 95


>mdm-MIR535c_MI0023130_83
          Length = 83

 Score =  107 bits (54), Expect = 9e-25
 Identities = 75/82 (91%)
 Strand = Plus / Plus

                                                                       
Query: 30  tgtgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttgtttacgg 89
           |||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct: 1   tgtgacaaggagagagagcacgcttgtcatcacccatgaacggatcatggttgtttacag 60

                                 
Query: 90  gcgtgccctctcttgttgtcat 111
           | |||| ||||||| |||||||
Sbjct: 61  gtgtgctctctcttcttgtcat 82


>rco-MIR535_MI0013431_Ricinus_communis_miR535_stem-loop_91
          Length = 91

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 32 tgacaacgagagagagcacgcttgt 56
          |||||||||||||||||||||||||
Sbjct: 6  tgacaacgagagagagcacgcttgt 30


>vvi-MIR535a_MI0006580_Vitis_vinifera_miR535a_stem-loop_101
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 32  tgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttgtttacgggc 91
           |||||||||||||||||||||| |||| ||  ||||  |||| ||||  ||| ||| |||
Sbjct: 11  tgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacaggc 70

                               
Query: 92  gtgccctctcttgttgtcat 111
           |||| |||||| | ||||||
Sbjct: 71  gtgctctctctcgctgtcat 90


>vvi-MIR535b_MI0006581_Vitis_vinifera_miR535b_stem-loop_101
          Length = 101

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 32  tgacaacgagagagagcacgcttgtcatcacgcatgaaaggatcatggttgtttacgggc 91
           |||||||||||||||||||||| |||| ||  ||||  |||| ||||  ||| ||| |||
Sbjct: 11  tgacaacgagagagagcacgctagtcagcattcatgcgaggaacatgactgtgtacaggc 70

                               
Query: 92  gtgccctctcttgttgtcat 111
           |||| |||||| | ||||||
Sbjct: 71  gtgctctctctcgctgtcat 90


>ppt-MIR535b_MI0003503_Physcomitrella_patens_miR535b_stem-loop_81
          Length = 81

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgacaacgagagagagcacgct 53
          |||||||||||||||||||||||
Sbjct: 1  gtgacaacgagagagagcacgct 23


>ppt-MIR535c_MI0003504_Physcomitrella_patens_miR535c_stem-loop_81
          Length = 81

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgacaacgagagagagcacgct 53
          |||||||||||||||||||||||
Sbjct: 1  gtgacaacgagagagagcacgct 23


>ppt-MIR535a_MI0003502_Physcomitrella_patens_miR535a_stem-loop_135
          Length = 135

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 31 gtgacaacgagagagagcacgct 53
          |||||||||||||||||||||||
Sbjct: 26 gtgacaacgagagagagcacgct 48


>ppt-MIR535d_MI0004725_Physcomitrella_patens_miR535d_stem-loop_85
          Length = 85

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 31 gtgacaacgagagagagcacgc 52
          ||||||||||||||||||||||
Sbjct: 2  gtgacaacgagagagagcacgc 23


>tcc-MIR535_MI0017532_Theobroma_cacao_miR535_stem-loop_120
          Length = 120

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 32 tgacaacgagagagagcacgct 53
          ||||||||||||||||||||||
Sbjct: 98 tgacaacgagagagagcacgct 77



 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 32 tgacaacgagagagagcacgcttgt 56
          ||||||||| |||||||||||||||
Sbjct: 21 tgacaacgatagagagcacgcttgt 45


>osa-MIR535_MI0003505_Oryza_sativa_miR535_stem-loop_94
          Length = 94

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 31 gtgacaacgagagagagcacgc 52
          ||||||||||||||||||||||
Sbjct: 5  gtgacaacgagagagagcacgc 26


>vvi-MIR535c_MI0006583_Vitis_vinifera_miR535c_stem-loop_101
          Length = 101

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 32 tgacaacgagagagagcacgct 53
          ||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32


>aqc-MIR535_MI0012112_Aquilegia_caerulea_miR535_stem-loop_87
          Length = 87

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 tgacaacgagagagagcacgc 52
          |||||||||||||||||||||
Sbjct: 1  tgacaacgagagagagcacgc 21


>pab-MIR535_MI0016129_Picea_abies_miR535_stem-loop_129
          Length = 129

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 tgacaacgagagagagcacgc 52
          |||||||||||||||||||||
Sbjct: 24 tgacaacgagagagagcacgc 44


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.